Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq135 98.7 8e-16 seq707 95.1 1e-14 seq4683 93.3 4e-14 seq1675 93.3 4e-14 seq2880 89.7 4e-13 seq171 89.7 4e-13 seq181 86.0 5e-12 seq33582 82.4 6e-11 >seq135 Length=179161 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | || | |||| ||| | || || || || || || ||||||||| Sbjct 30927 CCTCCCCGGAGACGGAGGACCAGATGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 30986 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| |||||||| || |||||| | ||||||||||| || |||||||| Sbjct 30987 AGGGTCCGGCCGTCCTCGAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 31046 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||| ||| || | | | || | ||||| | | || || Sbjct 31047 ATGCCCTCCTTGTCTTGGATTTTGGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACC 31106 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||| ||||| ||||| || ||||| ||||| Sbjct 31107 TCGAGGGTGATGGTCTTGCCGGTCAGGGTTTTGACGAAGATCTGCAT 31153 >seq707 Length=103418 Score = 95.1 bits (104), Expect = 1e-14 Identities = 135/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 |||| || || ||||||||| || | |||| ||||||||||||| || |||||| ||| Sbjct 63102 CTTTCTGGATGTTGTAGTCGGCCAAGGTGCGGCCGTCTTCGAGCTGCTTTCCGGCGAAAA 63043 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | | |||||| || ||||| || | || || || || ||||||| || | | | Sbjct 63042 TCAAACGCTGCTGGTCCGGAGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTGT 62983 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||||| || || || || ||||| || | || ||||| || |||||||| | Sbjct 62982 CGATGGTGTCGCTGCTCTCGACCTCGAGAGTGATGGTCTTCCCCGTTAGGGTTTTCACGA 62923 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 62922 AAATCTGCAT 62913 >seq4683 Length=32477 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | ||| | || | || || || |||||||||||| Sbjct 3780 TGCCACCGCGAAGCCTGAGCACGAGATGGAGAGTCGCCTCCTTCTGGATATTGTAGTCGG 3721 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| || || ||||| |||||| | ||||| | ||||||||| || | Sbjct 3720 CGAGGGTCCGGCCGTCCTCAAGTTGTTTGCCGGCGAAGATGAGCCTCTGTTGATCTGGAG 3661 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| ||| | | | || | ||||| | | || | Sbjct 3660 GGATGCCCTCCTTGTCCTGGATCTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCA 3601 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || |||||||||||||| ||||| Sbjct 3600 CCTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 3552 >seq1675 Length=66877 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| ||||| | || | || | ||| | || | || || || ||||||||||| Sbjct 7210 TGCCACCGCGAAGCCTGAGCACGAGATGGAGAGTCGCCTCCTTCTGGATATTGTAGTCAG 7151 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || |||| || || ||||| |||||| | ||||| | ||||||||| || | Sbjct 7150 CGAGGGTCCGGCCGTCCTCAAGTTGTTTGCCGGCGAAGATGAGCCTCTGTTGATCTGGAG 7091 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| ||| | | | || | ||||| | | || | Sbjct 7090 GGATGCCCTCCTTGTCCTGGATCTTGGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCCA 7031 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || |||||||||||||| ||||| Sbjct 7030 CCTCAAGGGTGATGGTCTTGCCGGTTAGGGTTTTCACAAAGATCTGCAT 6982 >seq2880 Length=47671 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || ||||||||| | | | || |||| |||||||| || ||| Sbjct 12881 GTAGACTCCTTCTGGATGTTGTAGTCGGCTAGGGTTCGGCCGTCCTCGAGCTGCTTTCCG 12940 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| | ||| || | ||| || | ||||| || || |||||| ||| Sbjct 12941 GCGAAGATGAGCCTCTGCTGGTTCGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCCTTC 13000 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | ||| || || || || || | || ||||| || ||| Sbjct 13001 ACATTGTCGATGGTGTCCGACGATTCCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTT 13060 Query 27231 TTCACAAAGATTTGCAT 27247 ||||| ||||||||||| Sbjct 13061 TTCACGAAGATTTGCAT 13077 >seq171 Length=169594 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||||||||| | | |||| | || |||||||| || || Sbjct 165780 GTGGATTCCTTTTGAATATTGTAGTCAGCGAGGGTGCGTCCATCCTCGAGCTGCTTGCCA 165721 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 || |||| || | || || ||||| || | || || || || ||| ||| ||| Sbjct 165720 GCAAAAATCAGCCTTTGCTGGTCCGGGGGGATGCCTTCCTTGTCTTGGATTTTGGCTTTG 165661 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | |||| ||||| | | |||||| || || ||||| | ||||| || |||||| Sbjct 165660 ACATTATCTATGGTGTCAGAGCTTTCAACCTCAAGGGTTATGGTCTTGCCAGTGAGAGTT 165601 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 165600 TTGACGAAGATCTGCAT 165584 >seq181 Length=165841 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 ||||| || || |||||||| || || || | ||| || | || |||||||| || || Sbjct 133709 GTAGATTCCTTCTGAATATTATAATCAGCCAAAGTTCGGC-CATCCTCGAGCTGCTTTCC 133767 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || ||||| | ||||| ||||| ||||||| || Sbjct 133768 TGCGAAGATGAGCCTCTGCTGGTCTGGCGGGATTCCCTCCTTATCTTGGATCTTGGCCTT 133827 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | || || | | || || || || || || | ||||| || || || Sbjct 133828 GACGTTGTCGATCGTATCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTTAGGGT 133887 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||||||||| ||||| | ||| Sbjct 133888 TTTCACAAAGATCTGCATGGTTGC 133911 >seq33582 Length=2169 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || |||||||| || || || | ||| || | || |||||||| || || Sbjct 1620 GTGGATTCCTTCTGAATATTATAATCAGCCAAAGTTCGGC-CATCCTCGAGCTGCTTTCC 1562 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 ||| | ||||| | ||| || || ||||| | ||||| ||||| ||||||| || Sbjct 1561 TGCGAAGATGAGCCTCTGCTGGTCTGGCGGGATTCCCTCCTTATCTTGGATCTTGGCCTT 1502 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | | || | ||||| | | || || || || || || | ||||| || | || Sbjct 1501 GACGTTGTCGATCGTGTCAGAGCTCTCGACCTCGAGGGTGATGGTCTTGCCGGTTAAGGT 1442 Query 27230 TTTCACAAAGATTTGCATAGCTGC 27253 |||||||||||| ||||| | ||| Sbjct 1441 TTTCACAAAGATCTGCATGGTTGC 1418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423339965393664