Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2275 114 2e-20 seq6231 100 4e-16 >seq2275 Length=55327 Score = 114 bits (126), Expect = 2e-20 Identities = 199/286 (70%), Gaps = 20/286 (7%) Strand=Plus/Minus Query 11539 AAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTGG 11598 ||| ||||||||||| || | || |||||||| || ||||||||||| |||||| | Sbjct 21626 AAAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCC--A 21569 Query 11599 CATACCA--CCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGACAATA 11656 | | ||| || || | | ||| | || || |||||||||||||||||||| ||||| Sbjct 21568 CCTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATG 21509 Query 11657 CATGG-----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 || || |||| ||| || | ||||| | ||| | || || ||| || | Sbjct 21508 CACGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAA 21454 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGG---GACATTTG 11768 | |||||||||| |||||| || | | || | |||| || ||| || | || | Sbjct 21453 CTCCAACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCA---G 21397 Query 11769 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGG 11814 || || |||| ||| || || || ||||||||||| ||||| || Sbjct 21396 CCTCGCCGGCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGG 21351 >seq6231 Length=25150 Score = 100 bits (110), Expect = 4e-16 Identities = 294/448 (66%), Gaps = 4/448 (1%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || ||||| || | |||||||||||| ||||||||||| | ||| ||||| ||||| Sbjct 18823 TACTCCCCAACTCTCTTCTCAAAGAAATTGGTCTTCCCCTGAAGACTAATCAGCTCCATC 18764 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAATGGGTG-GCACCCCAACTTGTTTGAGGAGACG 122489 | |||||||| |||| ||| | | || | | |||||| | || | Sbjct 18763 CAATCAAATGGGTTCTGCGCATCGTAGATCTTCCCGTATCCCAACGCACCC-ACCAGCCT 18705 Query 122490 ATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTACA 122549 || | ||| |||| ||||||| | |||| ||| |||||| || | | | || Sbjct 18704 GTCAGCCACGAACTCGATGTACTGGCTCATCAGATCACCGTTCATTCCAACTAAGGCGCA 18645 Query 122550 TGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTG 122609 || | ||||| | | |||| || |||| ||||||||||| || ||||| | | Sbjct 18644 CGGTAACGCGTCGCACACGAACTCTCTCTCTATCTCAACCGCGTCGCGGACGATTGACTT 18585 Query 122610 GATAGTTTCGGTAGTGGGTCTATTACGCAAAGTCTTGAAGAGCTC-CACGGCAAACTCCT 122668 | || ||| | | | || | | | ||||| |||| | || || Sbjct 18584 CACGCGCTCCTCGGTGAGCTTCATCCGGAGGAGCGAGTAGAGCAGGCACG-CGAAGTCGC 18526 Query 122669 GGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGAC 122728 ||| || || |||||||| || || | || || |||||| ||||| ||||| | | Sbjct 18525 AGTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACC 18466 Query 122729 CCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACAC 122788 | ||||| || | |||| | || |||||||| ||| ||||||||||| |||||||| | Sbjct 18465 CGCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGC 18406 Query 122789 ACGCAAACGCAAAAAGGCGTTCGGCGAA 122816 | ||||| || | | ||| || ||||| Sbjct 18405 AGGCAAAGGCCACGATGCGCTCCGCGAA 18378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 625615081651200