Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq6231 89.7 6e-13 seq2275 86.0 8e-12 >seq6231 Length=25150 Score = 89.7 bits (98), Expect = 6e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 ||| || || || || || ||||| | || ||||||||| |||||| ||||| | || Sbjct 18524 GTGTAGGCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCC 18465 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 ||||| || | ||| || ||||| || || || |||||||||||||||||||| || Sbjct 18464 GCGCTTTTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCA 18405 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAA 130173 || || || | || ||||| || || Sbjct 18404 GGCAAAGGCCACGATGCGCTCCGCGAA 18378 >seq2275 Length=55327 Score = 86.0 bits (94), Expect = 8e-12 Identities = 198/294 (67%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 14152 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGG 14211 ||| ||||||||||| ||||| | ||||| || || ||||| | || ||||| || Sbjct 21626 AAAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCCA-- 21569 Query 14212 CATACCA--CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATA 14269 | | ||| || || | | ||| | || || || ||||| ||||| ||||| || || Sbjct 21568 CCTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATG 21509 Query 14270 CATGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 14328 || || | |||| || || ||||| | ||| | ||||||| ||| || || || Sbjct 21508 CACGG-CGCTTTTGACTTTGCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAACTCC 21450 Query 14329 CACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACC 14388 ||||||| |||||| || | | || | || || ||| || | || || || Sbjct 21449 AACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCAGCCTCGCC 21390 Query 14389 CGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCGAGAAG 14442 |||| ||| || || || |||||||| || || || ||| ||| | ||||| Sbjct 21389 GGCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGGTGGCCCCACCAGAAG 21336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616055213976320