Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq6231 104 3e-17 seq2275 91.5 2e-13 >seq6231 Length=25150 Score = 104 bits (114), Expect = 3e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 || || ||||| || | || ||||| || || ||||| ||||||||||| || |||| Sbjct 18378 TTCGCGGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTC 18437 Query 94858 TGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAG 94917 ||||| || | ||||||||| ||||| || | ||||| ||||| |||||| |||||| Sbjct 18438 TGCGCGATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAG 18497 Query 94918 CTTATCTCTCGTGACGAGGGACTCCAC 94944 | ||||| || || || || || ||| Sbjct 18498 TTGATCTCGCGAGATGAAGGCCTACAC 18524 >seq2275 Length=55327 Score = 91.5 bits (100), Expect = 2e-13 Identities = 191/283 (67%), Gaps = 14/283 (5%) Strand=Plus/Minus Query 9613 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9672 ||||||||||||||| ||||| | || |||||||| ||||| | || ||||| | Sbjct 21626 AAAACCATCCATCTCCGTCAACAACTGATTAATAGTCTGTTCTCTCTCGTCATTTCC--A 21569 Query 9673 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 9730 | | ||| || || | | ||| | || || |||||||||||||||||||| || ||| Sbjct 21568 CCTCCCATTCCTGCCCCTCTCTGCCTCCCAACTGCATCAATCTCATCAATGAACACAATG 21509 Query 9731 CATGG-----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCA 9785 || || |||| ||| || ||||| | ||||| || | | ||| || | Sbjct 21508 CACGGCGCTTTTGACTTT-----GCCTTCTCAAACAAATCCCTCACTCTCGAGGCCCCAA 21454 Query 9786 CACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATT 9845 | |||||||||| |||||| || | | || | || || ||| || || | Sbjct 21453 CTCCAACAAACAGCTCCACGAACTCCGAAGCTGCGCACGAGAAGAACGGCGTGCCAGCCT 21394 Query 9846 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9888 | || || | ||| || || ||||| ||||| || ||||| || Sbjct 21393 CGCCGGCGACGGCACGAGCCAGAAGGGTCTTTCCGGTACCGGG 21351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581016179137280