Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq6231 127 2e-24 >seq6231 Length=25150 Score = 127 bits (140), Expect = 2e-24 Identities = 559/866 (65%), Gaps = 18/866 (2%) Strand=Plus/Plus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || | ||||||||| | |||| |||| ||||| || | || |||||| Sbjct 17967 TTCCCGATTCAGTACCCGGAGATCTGGGAAATGTACAAGAAGGCCGAGGCGTCGTTCTGG 18026 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTCAATTACGAC 59681 ||| ||||||| | ||||||| | |||| | | ||||| | || | | Sbjct 18027 ACCGCCGAGGAGGTCGACCTCGACCAGGACCAGCGCCACTGGGAGACCCTAACCCCGGGG 18086 Query 59682 GAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTGATG 59741 ||| |||| ||||||| ||||| ||||||||||| || || || || || | Sbjct 18087 GAGAAGCACTTCATCACTCACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTTCTC 18146 Query 59742 GAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGGTCGTTCTAC 59801 || ||| | | | ||| ||||| || ||| | | ||||| || | |||||| Sbjct 18147 GAGAATCTCGCCGGCCGCTTCATGAAGGAGGTACAGGTCTCGGAGGCGCGTGCCTTCTAC 18206 Query 59802 GCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGATCGATAA 59860 | | ||| ||| | ||| ||||| ||||||| |||| || | |||| | Sbjct 18207 GGCTTCCAGATCGCG-ATTGAGAACATCCATTCCGAGATGTACAGCCTTCTCCTCGAGAC 18265 Query 59861 GTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACG-TCCCCCG 59919 | | || || |||| |||||| |||| ||||| ||| | || || ||||| | Sbjct 18266 CTATATTAAAGACTCGGACGAGAAGAGCCGTCTCTTCCGGGCCGTCGACACCATCCCCTG 18325 Query 59920 CAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCATTTGC 59977 | || | || || | |||||| ||| ||||| || || ||| | || || Sbjct 18326 C-GTCGCCAAGAAGGCCCAGTGGGCCCTGCGCTGGATCGACGGCTCCGAGA--CGTTCGC 18382 Query 59978 ACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGC 60037 | || || | || ||||| |||||||| || ||||||||||| || ||||| || Sbjct 18383 GGAGCGCATCGTGGCCTTTGCCTGCGTGGAGGGGATCTTCTTCTCGGGGAGCTTCTGCGC 18442 Query 60038 TATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 || || |||||||||||||| || | ||||| || |||| ||||| |||||| |||| Sbjct 18443 GATATTTTGGCTCAAAAAGCGCGGGTTGATGCCCGGTCTGACCTTCTCGAACGAGTTGAT 18502 Query 60098 TTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCTATTGG 60156 || || || || ||||| || || || || ||| | |||||| || | ||| || Sbjct 18503 CTCGCGAGATGAAGGCCTACACTGCGACTTCGC-GTGCCTGCTCTACTCGCTCCT-CCGG 18560 Query 60157 AAAAATGCCCTTCCAAGGATATTCACAAG---ATTGTTCAGTGGGCTTGTGAAGTGGAGA 60213 | || || | || |||| ||| || || | || ||| | |||| Sbjct 18561 ATGAA-GCTC-ACCGAGGAGCGCGTGAAGTCAATCGTCCGCGACGCGGTTGAGATAGAGA 18618 Query 60214 GCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGAAATGA 60273 | |||||| | || ||| | || ||| | | || ||| ||| || |||| Sbjct 18619 GAGAGTTCGTGTGCGACGCGTTACCGTGCGCCTTAGTTGGAATGAACGGTGATCTGATGA 18678 Query 60274 CGCAGTACATTCAGTTTGTCGCGGACCGCCTCATGGCCCAGTTTGGAGAAGGACCAATTT 60333 |||||||| |||| || || ||| | || ||| ||| ||| | || || | Sbjct 18679 GCCAGTACATCGAGTTCGTGGCTGACAGGCTGGTGGGTGCGTTGGGATACGGGAAGATCT 18738 Query 60334 ACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGT-TGGAAGGGAAGACCAAC 60392 ||| | | | ||||| || || ||||||||| || | || | | ||||||||||| Sbjct 18739 ACGATGCGCAGAACCCATTTGATTGGATGGAGCTGAT-TAGTCTTCAGGGGAAGACCAAT 18797 Query 60393 TTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||| | || ||||| || Sbjct 18798 TTCTTTGAGAAGAGAGTTGGGGAGTA 18823 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546413857159680