Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq6231 102 9e-17 seq253 89.7 6e-13 seq1325 86.0 7e-12 seq479 86.0 7e-12 seq87 86.0 7e-12 seq21109 82.4 8e-11 >seq6231 Length=25150 Score = 102 bits (112), Expect = 9e-17 Identities = 281/420 (67%), Gaps = 18/420 (4%) Strand=Plus/Minus Query 74768 GCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTT 74827 ||||||||||| ||||| || ||||| || | || || ||||| | || ||||| Sbjct 18518 GCCTTCATCTCGCGAGATCAACTCGTTCGAGAAGGTCAGACCGGGCATCAACCCGCGCTT 18459 Query 74828 CTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAA 74887 || | |||||| || || |||||| || ||||||||| || || || || ||||| Sbjct 18458 TTTGAGCCAAAATATCGCGCAGAAGCTCCCCGAGAAGAAGATCCCCTCCACGCAGGCAAA 18399 Query 74888 GGCGACAAGGCGTTGCGCGAACGGTGCATCGGA--AGTC-ATCCAAGTCTGAGCCCATTC 74944 ||| || | ||| | ||||||| | ||||| ||| ||||| | | ||||| | Sbjct 18398 GGCCACGATGCGCTCCGCGAAC---GTCTCGGAGCCGTCGATCCAGCGCAGGGCCCACTG 18342 Query 74945 AGCTTTTCGTTTGAC--CGCA-GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTC 75001 || || ||| | |||| |||| || |||| || ||||||| | |||||| Sbjct 18341 GGCCTT---CTTGGCGACGCAGGGGATGGTGTCGACGGCCCGGAAGAGACGGCTCTTCTC 18285 Query 75002 TTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTC 75061 || | || || | | || | | ||| |||| |||| ||||| || ||| Sbjct 18284 GTCCGAGTCTTTAATATAGGTCTCGAGGAGAAGGCTGTACATCTCGGAATGGATGTTCTC 18225 Query 75062 GTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCCTT--TGA 75118 | ||| |||| | ||||||| | |||||||| | | |||||| ||||| ||| Sbjct 18224 AAT-CGCGATCTGGAAGCCGTAGAAGGCACGCGCCTCCGAGACCTGTACCTCCTTCATGA 18166 Query 75119 AAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTAC 75178 | | | ||| |||||| | ||||||||||| ||||||||||| || || || || Sbjct 18165 AGCGGCC--GGCGAGATTCTCGAGAACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGAC 18108 >seq253 Length=151715 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/76 (87%), Gaps = 1/76 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 80505 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 80564 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||| ||||| Sbjct 80565 TGAGCTACGAGAGCAA 80580 >seq1325 Length=76607 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 20152 TGCTTTCACTGAGAGTTGAACTCAGGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 20211 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 20212 TGAGCTATGAAAGC 20225 >seq479 Length=122906 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 53798 TGCTCTCGTTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 53739 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 53738 TGAGCTACGAGAGC 53725 >seq87 Length=208552 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 ||||||| |||| |||| |||| ||||||||||||||||||||||||||| ||||| Sbjct 142118 TGCTTTCATTGAGAGTTGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 142177 Query 79684 TGAGCTACGAAAGC 79697 ||||||| |||||| Sbjct 142178 TGAGCTATGAAAGC 142191 >seq21109 Length=4933 Score = 82.4 bits (90), Expect = 8e-11 Identities = 65/77 (84%), Gaps = 1/77 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 3951 TGCTCTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 3892 Query 79684 TGAGCTACGAAAGCAAA 79700 |||||||||| ||| || Sbjct 3891 TGAGCTACGAGAGCGAA 3875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545110093945600