Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq707 98.7 7e-16 seq1675 93.3 3e-14 seq13557 87.8 1e-12 seq135 87.8 1e-12 seq459 86.0 4e-12 seq181 86.0 4e-12 seq400 84.2 2e-11 >seq707 Length=103418 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGC 27846 || ||||| ||||| |||||||| || || ||||| || || | || ||||| ||| Sbjct 62910 AAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTCGAGAGC 62969 Query 27847 ACCGACG--ATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 | |||| || ||||| ||||| || || ||||| ||||| |||| || Sbjct 62970 AGCGACACCATCGACAAT--GTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGG 63027 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| || || ||||| |||||||| || | || |||| |||| |||| |||| | Sbjct 63028 ACCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACT 63087 Query 27965 ACAACATCCAAAAAG 27979 |||||||||| |||| Sbjct 63088 ACAACATCCAGAAAG 63102 >seq1675 Length=66877 Score = 93.3 bits (102), Expect = 3e-14 Identities = 164/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| ||||||||||| ||| | ||||| || || || | || || || ||| || Sbjct 7210 ATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCTCC 7269 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || || || || ||| | ||| ||| | Sbjct 7270 GATACCATTGACAAT--GTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCGCCGGATC 7327 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 ||||| || | || ||||||||||| |||||||| || | || | ||| ||||||| | Sbjct 7328 AGCAAAGGCTGATCTTTGCCGGAAAGCAATTGGAGGATGGTCGTACATTGGCCGATTATA 7387 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCGACGATT 28024 | ||||| |||||| || |||| | ||| | ||| | || || || | |||| Sbjct 7388 ATATCCAGAAAGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGCGGTGGTGCTGATT 7444 >seq13557 Length=10351 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || |||||| || || | || || || ||| | Sbjct 8299 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAAACGATCACTCTGGAGGTTGAGAGCTCG 8358 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| ||| || ||||| || ||| | || || | Sbjct 8359 GATACTATTGACAAT--GTCAAAGCAAAGATTCAAGACAAGGAGGGTATCCCACCAGACC 8416 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| ||| |||| || | |||| ||| | ||||||| Sbjct 8417 AGCAGAGGTTGATCTTTGCAGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTACA 8476 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 8477 ACATTCAAAAGGAG 8490 >seq135 Length=179161 Score = 87.8 bits (96), Expect = 1e-12 Identities = 137/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || |||||||| ||||| || |||||| || || | || || || ||| || Sbjct 30469 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAAACGATCACTCTGGAGGTTGAGAGCTCC 30410 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| || || ||||| || || | || || | Sbjct 30409 GATACTATTGACAAT--GTCAAAGCGAAGATTCAAGACAAGGAGGGGATCCCACCTGATC 30352 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||| ||||| |||||||| || | |||| ||| | ||||||| Sbjct 30351 AGCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGCCGCACTTTGGCTGATTACA 30292 Query 27968 ACATCCAAAAAGAG 27981 |||| ||||| ||| Sbjct 30291 ACATTCAAAAGGAG 30278 >seq459 Length=124062 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| |||||||| || ||||||||||| || || | || || |||||| | Sbjct 120585 AATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACAATCACCTTGGAGGTGGAAAGCTC 120644 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| ||| || ||||||||||| |||| || Sbjct 120645 TGATACAATTGACAAT--GTCAAGGCAAAGATCCAGGACAAAGAAGGCATTCCCCCAGAC 120702 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| ||||| || | || || | | | || | || ||| Sbjct 120703 CAGCAGAGGCTCATCTTTGCAGGAAAGCAGCTTGAAGATGGTAGGACACTGGCAGACTAC 120762 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || ||| ||| |||||||||| | ||| | ||||| || Sbjct 120763 AACATTCAGAAGGAGTCGACTCTGCATTTGGTGCTCCGTCTACGTGGTGG 120812 >seq181 Length=165841 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| || || |||| ||| ||||| |||| || || |||||||| |||||||| Sbjct 159019 GACAAGGAGGGAATTCCCCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAATTGGAG 158960 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | | || |||||||||||||||| || ||| |||| |||| ||||| | Sbjct 158959 GACGGCAGGACCCTGGCCGATTACAACATCCAGAAGGAGTCCACTCTGCACTTGGTGCTC 158900 Query 28003 CGTTTGCGTGGCGGC 28017 || ||| | || ||| Sbjct 158899 CGGTTGAGGGGTGGC 158885 >seq400 Length=129899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/194 (70%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||| ||| | || || || || || | || || || ||| || Sbjct 14479 ATGCAGGTTTTTGTGAAGACTTTGACAGGCAAGACAATCACTCTGGAGGTTGAGAGCTCC 14420 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| |||||| ||| || ||||||||||| | || ||| | Sbjct 14419 GATACCATTGACAAT--GTCAAAGCAAAGATTCAAGACAAAGAAGGAATCCCACCGGACC 14362 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| || ||||||||||| ||| |||| || | |||| ||| | ||||| | Sbjct 14361 AGCAGAGGTTGATCTTTGCCGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTATA 14302 Query 27968 ACATCCAAAAAGAG 27981 |||| || || ||| Sbjct 14301 ACATTCAGAAGGAG 14288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354527136661344