Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq171 102 7e-17 seq181 95.1 1e-14 seq459 91.5 1e-13 seq55 91.5 1e-13 >seq171 Length=169594 Score = 102 bits (112), Expect = 7e-17 Identities = 151/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| || || ||| ||| || || |||||||| ||||| ||||| | | | || || Sbjct 166477 CACCAAGTGCAGAGTGGACTCCTTCTGAATATTATAGTCGGCGAGTGTCCTTCCATCCTC 166418 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || | | ||||||||| | ||| | | |||||||||| Sbjct 166417 AAGCTGCTTACCTGCAAAAATCAATCTCTGCTGGTCTGGGGGAATACCCTCTTTGTCCTG 166358 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||||| ||| | | | | ||| || ||| ||||| |||| ||||| | Sbjct 166357 AATTTTAGCTTTCACATTATCAATCGTGTCAGAGCTT---TCCACTTCCAGAGTGATGGT 166301 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || || || || |||||||||||||| Sbjct 166300 TTTGCCGGTGAGGGTCTTGACAAAGATTTGCAT 166268 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 39082 TGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGT 39141 || || ||| ||| || || || ||||| || ||||| || | | || |||||||| Sbjct 166698 TGAAGGGTGGACTCCTTCTGGATGTTATAGTCAGCAAGGGTCCTCCCATCCTCAAGCTGC 166639 Query 39142 TTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTC 39201 || || |||||||| || | ||||||||| | || | || ||| |||||| ||| | | Sbjct 166638 TTTCCAGCAAATATGAGCCTCTGCTGGTCCGGAGGAATGCCCTCCTTGTCC-TGAATCTT 166580 Query 39202 TGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 |||| | | | || |||||| |||||| |||| || || | || || || Sbjct 166579 GGTTTTTACATTGTCAATCGTATCTGAACTCTCCACCTCCAAAGTAATGGTCTTCCCAGT 166520 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||||||||||||| ||||| Sbjct 166519 CAGAGTTTTAACAAAGATCTGCAT 166496 Score = 84.2 bits (92), Expect = 2e-11 Identities = 152/218 (70%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || |||||||| || || || ||||| || || || ||||| ||||| || || | Sbjct 166254 CGCAACACCAAGTGAAGAGTTGATTCTTTCTGGATGTTGTAATCCGCAAGAGTGCGACCA 166195 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || ||||| || || | ||||||||| | || | || ||| || Sbjct 166194 TCCTCTAACTGTTTCCCTGCAAAGATGAGCCTCTGCTGGTCTGGAGGAATGCCCTCCTTA 166135 Query 39190 TCCATGATTTTCTGT-TTGAGCGTCGCCACCGTATCGCTCGACT--CCACGTCCACCGTG 39246 ||| ||| | | || |||| | | | ||||| | ||| | || |||| ||| Sbjct 166134 TCC-TGAATCTTTGCCTTGACATTATCTATTGTATC--TGAACTTTCAACCTCCAAGGTG 166078 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | ||||| || || ||||| |||||||||||||| Sbjct 166077 ATGGTCTTTCCGGTGAGGGTTTTGACAAAGATTTGCAT 166040 >seq181 Length=165841 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||| | ||| || || ||||| || || || |||||||| || || || || | || || Sbjct 136545 CACAAGATGCAGAGTACTCTCCTTCTGAATGTTATAATCCGCTAGAGTCCGGCCATCCTC 136604 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 | || || || || ||||| || | ||||||||| | || | | ||| ||||| Sbjct 136605 CAATTGCTTCCCAGCGAATATGAGCCTCTGCTGGTCCGGTGGAATCCCCTCCTTGTCTTG 136664 Query 39195 GATTTTCTGTTTGAGCGTCGCCAC-CGTATCGCTCGACTCCACGTCCACCGTGATACTTT 39253 |||||| |||| ||| | || ||||||| |||||| |||| ||||| | | Sbjct 136665 AATTTTCGCCTTGA-CGTTGTCAATCGTATCGGAGCTCTCCACCTCCAGAGTGATCGTCT 136723 Query 39254 TTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| || || |||||||||||||| Sbjct 136724 TTCCTGTCAGAGTCTTCACAAAGATTTGCAT 136754 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| || || ||||||||||| || || || || | || || Sbjct 158448 ACCAAGTGGAGGGTGGACTCCTTCTGGATATTATAATCAGCCAGGGTACGACCATCCTCG 158507 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGT-CGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| ||||| ||||| || || | |||||||| ||||||| | || || |||||| Sbjct 158508 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGGATCCCT-TCCTTGTCCTG 158566 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||||| | | | |||||| |||||| |||| || || | || Sbjct 158567 GATCTTGGCTTTGACATTATCAATGGTATCGGAGCTCTCCACCTCCAGAGTAATTGTCTT 158626 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||| || || || || || ||||| Sbjct 158627 GCCAGTCAGAGTCTTCACGAAAATCTGCAT 158656 >seq459 Length=124062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || ||| ||| ||||| ||||| ||||| ||||| || || | || || Sbjct 120566 ACCAAGTGAAGGGTGGACTCCTTTTGGATATTGTAATCTGCAAGGGTGCGACCATCCTCT 120507 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| ||||| || || | |||||| || | ||| | | ||| |||||| | Sbjct 120506 AGCTGTTTGCCAGCAAAGATGAGCCTCTGCTGATCTGGGGGGATACCCTCCTTGTCCTGG 120447 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTT 39252 || || |||| | | | ||||| ||| ||| || |||| ||||| | Sbjct 120446 ATCTTTGCCTTGACATTATCGATTGTATCAGAGCT---CTCGACCTCCAAGGTGATGGTC 120390 Query 39253 TTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||| ||||| Sbjct 120389 TTCCCTGTGAGAGTCTTGACAAAGATCTGCAT 120358 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/213 (69%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 ||||||||| || || ||| || || || || || || || ||||| | | || || Sbjct 120795 CACCAAATGCAGAGTCGACTCCTTCTGAATGTTGTAGTCTGCCAGTGTCCTACCATCTTC 120736 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||| || || ||||| || || | ||||||||| | ||| | || ||||||||| Sbjct 120735 AAGCTGCTTTCCTGCAAAGATGAGCCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCCTG 120676 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || |||| | | | ||||| ||| ||||| |||| ||||| | Sbjct 120675 GATCTTTGCCTTGACATTGTCAATTGTATCAGAGCTT---TCCACCTCCAAGGTGATTGT 120619 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || |||||||||||||| Sbjct 120618 CTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 120586 >seq55 Length=242041 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 ||||| || || || ||| ||||| || || || || || || ||||| | || ||| Sbjct 38196 ACCAAGTGGAGGGTTGACTCCTTTTGGATGTTGTAGTCAGCTAGGGTTCGGCCATCCTCA 38255 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||| ||||| ||||| || |||||||||||||| | ||| | || || || ||| | Sbjct 38256 AGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGGGGAATGCCTTCCTTATCCTGG 38315 Query 39196 ATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 || || | | | ||| | | | || || |||||||| || | |||||| | || Sbjct 38316 ATCTT-GGCCTTAACGTTGTCAATGGTGTCAGAAGACTCCACCTCAAGGGTGATAGTCTT 38374 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 || || || || || || || |||||||||| Sbjct 38375 GCCGGTGAGGGTCTTCACGAAAATTTGCATCT 38406 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427933863295136