Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq13557 134 9e-27 seq135 118 7e-22 seq707 113 3e-20 seq181 107 1e-18 seq3539 105 5e-18 seq400 104 2e-17 seq8125 100 2e-16 seq1843 86.0 4e-12 >seq13557 Length=10351 Score = 134 bits (148), Expect = 9e-27 Identities = 150/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| |||||||||||||| || ||||| | || Sbjct 8299 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAAACGATCACTCTGGAGGTTGAGAGCTCG 8358 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | ||| ||| ||||| || ||| | || ||||| || Sbjct 8359 GATACTATTGACAATGTCAAAGC-AAAGATTCAAGACAAGGAGGGTATCCCACCAGACCA 8417 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || |||||||| || | |||||||| | |||||||| Sbjct 8418 GCAGAGGTTGATCTTTGCAGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTACAA 8477 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| ||||| || Sbjct 8478 CATTCAAAAGGAGTCTAC 8495 >seq135 Length=179161 Score = 118 bits (130), Expect = 7e-22 Identities = 147/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || || ||||| |||||||||||||| || ||||| | | Sbjct 30469 ATGCAGATCTTTGTGAAGACTCTGACGGGGAAAACGATCACTCTGGAGGTTGAGAGCTCC 30410 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | ||| | || | || ||||| || || | || || ||||| Sbjct 30409 GATACTATTGACAATGTCAAAGCGAAGA-TTCAAGACAAGGAGGGGATCCCACCTGATCA 30351 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||| |||| || | |||||||| | |||||||| Sbjct 30350 GCAGAGGTTGATCTTTGCAGGAAAGCAATTGGAGGATGGCCGCACTTTGGCTGATTACAA 30291 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| ||||| ||||| ||| Sbjct 30290 CATTCAAAAGGAGTCTACA 30272 Score = 107 bits (118), Expect = 1e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| |||||||| |||||||||||||| || || | | Sbjct 30697 ATGCAGATCTTCGTCAAAACCCTAACGGGAAAGACGATCACTCTCGAGGTGGAGAGCTCT 30638 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | |||||| ||||| || || | ||||||||||| Sbjct 30637 GATACGATCGATAATGTCAAGGC-GAAAATTCAAGACAAGGAGGGCATTCCGCCAGATCA 30579 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| || || || ||||| || ||| |||| || | | ||| | | ||||| || Sbjct 30578 GCAGCGGTTGATCTTCGCCGGAAAGCAATTGGAGGATGGCAGGACTCTTGCGGATTATAA 30519 Query 23790 CATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 30518 TATTCAGAAGGAGTCGAC 30501 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || ||||||||||| || || || | | Sbjct 30925 ATGCAGATCTTCGTGAAAACCCTCACCGGGAAGACGATCACTCTGGAGGTCGAGAGCTCT 30866 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || |||||| ||||| || || | || || ||||| Sbjct 30865 GACACAATCGACAACGTCAAGGCGAAAATTCAAGACAAGGAGGGGATTCCTCCGGATCAG 30806 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || || |||| |||| || || | | |||||| || Sbjct 30805 CAGAGGCTGATCTTCGCCGGAAAGCAGTTGGAGGACGGCCGGACCCTCGCCGATTATAAT 30746 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || || || || | ||||| || Sbjct 30745 ATCCAGAAGGAATCGACTCTCCATTTGGT 30717 >seq707 Length=103418 Score = 113 bits (124), Expect = 3e-20 Identities = 143/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||| ||||| || || ||||||||||| || || | Sbjct 62910 AAGATGCAGATTTTCGTGAAAACCCTAACGGGGAAGACCATCACTCTCGAGGTCGAGAGC 62969 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| ||||| | || || || Sbjct 62970 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATTCCTCCGGA 63028 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || || ||||| || || || ||||||| ||||| || | ||| || Sbjct 63029 CCAGCAGCGTTTGATTTTCGCCGGAAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTA 63088 Query 23787 CAACATACAAAAAG 23800 |||||| || |||| Sbjct 63089 CAACATCCAGAAAG 63102 >seq181 Length=165841 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||| ||||| || || |||||||||||||| ||||| | | Sbjct 136982 ATGCAGATCTTCGTCAAAACTCTCACCGGCAAGACGATCACTCTCGAGGTTGAGAGCTCC 136923 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||||| || || ||||| | || || || || Sbjct 136922 GACACCATCGATAACGTCAAGGCTAAAATCCAGGATAAGGAAGGAATTCCCCCGGACCAG 136863 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || ||||| ||||||| | || | | ||||||||| Sbjct 136862 CAGAGGTTGATCTTCGCCGGAAAGCAACTCGAAGACGGCAGAACCCTCGCCGATTACAAT 136803 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || || || || ||||| || || || ||| ||||| || | || || Sbjct 136802 ATCCAGAAGGAATCCACTTTGCACTTGGTTCTAAGGCTGAGGGGTGG 136756 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || |||||||||||||| || || | | Sbjct 159340 ATGCAGATCTTCGTCAAAACCCTCACCGGGAAGACGATCACTCTCGAGGTCGAGAGCTCC 159281 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || || || Sbjct 159280 GACACCATCGATAACGTCAAGGCCAAGATCCAGGACAAGGAAGGGATCCCCCCGGACCAG 159221 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||| || ||||| ||||||| | ||| ||| |||||||||| Sbjct 159220 CAGAGGCTGATCTTCGCCGGAAAGCAACTCGAAGACGGCAGGACTCTAGCCGATTACAAC 159161 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 159160 ATCCAGAAGGAATCGAC 159144 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| ||||||||||| || || || ||||||||||| ||||| | | Sbjct 159112 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACCATCACTCTCGAGGTTGAGAGCTCC 159053 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 159052 GACACCATCGACAACGTCAAGGCTAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAG 158993 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || || ||||| || ||| |||| |||| | || | | |||||||||| Sbjct 158992 CAGAGGTTGATCTTCGCCGGAAAGCAATTGGAGGACGGCAGGACCCTGGCCGATTACAAC 158933 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 158932 ATCCAGAAGGAGTCCAC 158916 >seq3539 Length=40568 Score = 105 bits (116), Expect = 5e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| ||||| || || || || || ||||||||||| ||||| Sbjct 16656 AACATGCAAATTTTCGTGAAAACTCTAACTGGGAAGACCATCACTCTCGAGGTTGAGGGT 16715 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | ||| | || || || |||||||| | || || || Sbjct 16716 AACGATACCATCGACAATGTCAAAGC-CAAGATCCAGGATAAAGAAGGCATCCCTCCTGA 16774 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||||||| | | || ||||| ||||| ||| ||||||| | | ||| | | ||||| Sbjct 16775 TCAACAGAGACTGATCTTTGCTGGCAAGCAATTGGAAGATGGCAGAACTCTTGCGGATTA 16834 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| ||||| |||||||| | || | || || ||| || | |||||| Sbjct 16835 TAACATTCAAAAGGAGTCCACTCTTCACCTGGTGTTGAGGCTGAGGGGAGGA 16886 >seq400 Length=129899 Score = 104 bits (114), Expect = 2e-17 Identities = 144/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||| |||| || || || | || || || || |||||||| || ||||| | | Sbjct 14479 ATGCAGGTTTTTGTGAAGACTTTGACAGGCAAGACAATCACTCTGGAGGTTGAGAGCTCC 14420 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| |||| | || ||||||||||| | || || || || Sbjct 14419 GATACCATTGACAATGTCAAAGCAAAGA-TTCAAGACAAAGAAGGAATCCCACCGGACCA 14361 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || |||||||| || |||||||| || | |||||||| | ||||| || Sbjct 14360 GCAGAGGTTGATCTTTGCCGGAAAGCAACTGGAGGATGGCCGCACTTTGGCTGATTATAA 14301 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 14300 CATTCAGAAGGAGTCTACA 14282 >seq8125 Length=19300 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||| | |||||||| |||| || |||||||| || ||||| || || Sbjct 10132 AAGATGCAGATTTTCATGAAAACCCTAGCGGGGAAGACGATCACCCTGGAAGTGGAGTCG 10073 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 ||||||| | || | | || || ||| ||||| || || | ||||| || Sbjct 10072 TCGGACACCATCGACAACGTGAAGGCCAAGATTCAAGACAAGGAGGGCATCCCGCCGGAC 10013 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || ||||| || ||||| || || | || || ||| ||| ||| Sbjct 10012 CAGCAGAGGCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGAACCCTAGCCGACTAC 9953 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || |||||||| Sbjct 9952 AACATCCAGAAGGAGTCCAC 9933 >seq1843 Length=63335 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||| |||||| |||||||| ||||| || || ||||||||||| || || | Sbjct 23310 AAGATGCAGGCTTTCGTGAAAACCCTAACGGGGAAGACAATCACTCTCGAGGTCGAGAGC 23369 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | || | || || ||||| ||||| | | || || Sbjct 23370 AGCGACACCATCGACAATGTCAAGGC-CAAGATCCAAGACAAGGAAGGCATCCTCCCGGA 23428 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || || ||||| || || || |||||| ||||| || | ||| | Sbjct 23429 CCAGCAGCGTTTGATTTTAGCCGGAAAGCAGCTTGAAGACAGCCGCACCTTGGCCGAATT 23488 Query 23787 CAACATACAAAAAG 23800 ||||| || |||| Sbjct 23489 TAACATCCAGAAAG 23502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 336741323758976