Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3539 86.0 5e-12 >seq3539 Length=40568 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || ||||||| ||| | ||| || || |||||||| || ||||| || | |||| || | Sbjct 16873 CTCAACACCAGGTGAAGAGTGGACTCCTTTTGAATGTTATAATCCGCAAGAGTTCTGCCA 16814 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 ||||||||||| ||||| ||| | || || || ||||| || || | ||||||||| Sbjct 16813 TCTTCCAATTGCTTGCCAGCAAAGATCAGTCTCTGTTGATCAGGAGGGATGCCTTCTTTA 16754 Query 101144 TC 101145 || Sbjct 16753 TC 16752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408123674842848