Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rosa_20x_20damascena_20[genbank_20GCA_5F001662545.1_202016-06-13] 307,872 sequences; 711,719,955 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq12296 114 2e-20 seq193897 95.1 2e-14 seq194278 89.7 7e-13 >seq12296 Length=11864 Score = 114 bits (126), Expect = 2e-20 Identities = 147/202 (73%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAA--CTCTCAACATTGGAATAATGC 76811 || |||||||| | ||| | |||||| | |||||||| ||| || ||||||| | |||| Sbjct 7254 CCCCCCTGATCAACATAACGGGCAGTATCATTATAAAAACTCGCAGCATTGGACTGATGC 7195 Query 76812 CGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAG 76871 | | ||||| |||||||||||| ||||||||| ||| | |||||| || || || Sbjct 7194 CAATGGATGTCCCATTTGTTCCATGAATATAACTGCCAGTGGTACGAATGTTGTGAACAG 7135 Query 76872 ATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGA 76931 | | || ||||| || || ||| ||| | |||||| ||||| || ||||| | Sbjct 7134 AGACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACATTCCTTCAAGGTATCATATA 7075 Query 76932 TGCCCTCTATACTATCATCCAT 76953 || | || || |||||||| || Sbjct 7074 TGACTTCGATGCTATCATCTAT 7053 Score = 95.1 bits (104), Expect = 2e-14 Identities = 125/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 |||||||||||| || || || | | | ||||| || ||||| ||| ||||||| Sbjct 7786 CTCTCTTTCATAATGAGTGTACAGTTGCTAAAATTTTTCACCCCAGCAATCTGCCAAACC 7727 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||||| ||||| | |||||||| || |||| | | || ||| | |||||| | Sbjct 7726 TGGAGACTCATTAGGACAAAATAATGACCAATCTCCAT-TACTTTAAACTCTTTTCATGA 7668 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCT 76660 | |||||||| | ||| |||||| ||| ||||| || | ||| ||||| Sbjct 7667 ACAGATCAGGCACCCAAAGAGCATAAAAAAGATCACGAGCTCT--GTTCT 7620 >seq193897 Length=263 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | ||||| | |||| |||||| | ||| ||||| ||||| Sbjct 123 CCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGTAGCATCGGAATGATGCCA 182 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| ||||||||| ||| |||||||| || || ||| Sbjct 183 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACAGAG 242 Query 76874 AGGCCTATTCCTCCTGC 76890 | || ||||| || || Sbjct 243 ACACCAATTCCCCCAGC 259 >seq194278 Length=263 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || |||||||| | ||| | ||||| | |||| |||||| | ||||||||| ||||| Sbjct 123 CCCCCCTGATCAACATAACGAGCAGTATCATTAAAAACTCGTAGCATTGGAATGATGCCA 182 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || || || |||||||||||| ||| ||||| ||| |||||||| || || ||| Sbjct 183 TTGGACGTCCCATTTGTTCCACGAATGTAACTGCCAGTGGCACGAATGTTGTGAACAGAG 242 Query 76874 AGGCCTATTCCTCCTGC 76890 | || ||||| || || Sbjct 243 ACACCAATTCCCCCAGC 259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710190743255040