Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq794097 149 6e-31 >seq794097 Length=14469 Score = 149 bits (164), Expect = 6e-31 Identities = 496/760 (65%), Gaps = 29/760 (4%) Strand=Plus/Plus Query 16673 CTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTC 16732 || |||||||| | || | ||| || || || || || || |||| || || | Sbjct 11700 CTCTGGTAATCCCCCACTCTTTTCTCAAAGAAATTGGTCTTCCCCTGCAGGCTAATCAAC 11759 Query 16733 TCCATGAAATCAAAAGGATTAGTAGCTGAAAAT-----ATTTTAGAGTACCCCAGTTCGG 16787 ||||| ||||||| || || ||| | || || || |||||||| | Sbjct 11760 TCCATCCAATCAAACGGGTT-----CTGCACATTGTACATCTTCCCGTACCCCAACGCCC 11814 Query 16788 CGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTA 16847 | | |||||||||||| || ||||||||||| || | ||| ||||| | |||||| || | Sbjct 11815 CCAGTAATCTATCCGCCACGAATTCTATATACTGCCTCATCAATTCTCCGTTCATCCCCA 11874 Query 16848 T-AAGACGTACCGGAAGAGCTTCCGTCAAAAAT--CGTTGCTCTATAACAACCGCTTCCT 16904 || || || || || || || || ||| | || |||||| | || || ||| Sbjct 11875 CCAATGCGCAC-GGCAGCGCCTCGCACACGAATTCCCTT--TCTATATCCACGGCATCCG 11931 Query 16905 TAATAATACTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATCAGAC 16964 | || | |||| |||||| | | | | || || | | ||| ||| | Sbjct 11932 CCACCATCCCCTTCACTCTCTCCTCGCTCAGCTTCTTCTTCAGCAGGCTGTACAGCAGGC 11991 Query 16965 ATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATA--AGTTCGTTAGAAAATGTCAA 17022 | ||||| ||||| || || ||||| || | || |||| | |||||| || || ||||| Sbjct 11992 ACGCGAAGTCGCAGTGCAAACCCTCATCCC-GC-GATATCAATTCGTTGGAGAACGTCAA 12049 Query 17023 CCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAA 17082 |||||||||| || || ||||| | ||| ||||| ||| ||| || || ||||| Sbjct 12050 CCCGGGCATCAACCCGCGCTTCTTAAGCCAGAATATTGCGCAGAAGCTTCCGGAGAAGAA 12109 Query 17083 TATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACG--TCGCGTCTTTGTTA 17140 ||| ||||| ||| | || || |||| | || |||| | | | ||| | || Sbjct 12110 TATCCCCTCCACGCAGGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAACCCTG--- 12166 Query 17141 CGAATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCC 17200 |||||| | | |||| | ||| || | || | ||| || || | ||||| Sbjct 12167 --AATCCAGCGCAGGGCCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGGATGGCG 12224 Query 17201 TTAAATAATTTCTCTTTTTCCTGTAGG-TCGATTATATACGTATCGATGAGTAGGCTGTA 17259 || | | | || || | || || | ||||| || ||||| | |||||||| Sbjct 12225 CGGAAGAGCATGGCCTTCTCG-GCAGAATCCTTGATATAGGTCTCGATCAAAAGGCTGTA 12283 Query 17260 CATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGC 17319 ||| |||||||| |||||||| ||||| ||||| || ||||| ||| ||||| || | Sbjct 12284 CATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGA 12343 Query 17320 TATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGC 17379 | || || || ||| || | || ||||| ||| |||||||||||| || Sbjct 12344 GACCTGGACCTCGTTCATGAAGCGGGCGGCAAGATTCTCGAGGACGATGCCGTCGGAAGC 12403 Query 17380 GGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCG 17419 |||||| || || | | ||||| ||||||| || ||| Sbjct 12404 GGCGAAGAAGGCGAGGACGTGCTTGATGAAATGCTTCTCG 12443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512407096755840