Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq548568 107 2e-18 seq405401 107 2e-18 >seq548568 Length=13427 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| ||||| || || ||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || |||| ||| |||| || ||||| | ||| ||||| || || | || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | ||| | | || | | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||| |||| || ||| |||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 >seq405401 Length=1294 Score = 107 bits (118), Expect = 2e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 54425 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 54484 ||||| ||||| || | ||| |||| || || ||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 54485 TACGTCTCGATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 54543 || |||| ||| |||| || |||||| | ||| ||||| || || | || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 54544 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAA 54603 |||||||||||| |||||||| | ||| | | || | | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 54604 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 |||||||||||||| |||| || ||| |||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587826775722240