Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq731700 91.5 1e-13 seq500796 89.7 4e-13 seq621678 86.0 5e-12 >seq731700 Length=3081 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| |||| || |||| || || ||||||||| ||| ||| | Sbjct 2059 ATGCAAATCTTCGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAAGTGGAGAGTTCG 2118 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || ||||| || ||| || || |||||| | || ||| || Sbjct 2119 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAG 2178 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || || || || || ||| || || |||| ||||| ||| Sbjct 2179 CAGAGGCTGATTTTTGCTGGGAAGCAGCTAGAGGATGGCAGGACCTTGGCGGATTATAAT 2238 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTG 29171 ||||||||||| || ||||| ||| ||||| Sbjct 2239 ATTCAGAAGGAGTCGACTCTGCACTTGGTG 2268 >seq500796 Length=7474 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||||||||| ||||||| ||||| || ||||| || || || || | || Sbjct 2794 ATGCAAATATTTGTCAAAACTTTGACTGGGAAAACAATCACTTTGGAGGTTGAGAGCTCA 2853 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| ||||||| || || ||||| | || |||||| Sbjct 2854 GATACAATTGATAATGTGAAGGCAAAAATTCAAGACAAGGAAGGGATCCCACCGGATCAA 2913 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 ||| | || || ||||| || || || || |||||| ||| |||| ||||||||| Sbjct 2914 CAACGCCTCATTTTTGCTGGGAAGCAGCTTGAAGATGGACGCACTCTGGCAGATTACAAT 2973 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || |||||||| || || |||||| |||| Sbjct 2974 ATCCAGAAGGAGTCCACCCTTCACCTGGT 3002 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || | || || |||||||| || ||| ||| || | Sbjct 1882 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACCATAACGCTCGAGGTTGAAACCTCT 1941 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | |||| ||| ||| ||| ||||| ||||| | || |||||| Sbjct 1942 GATACCATCGATAATCTCAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 2001 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || |||||||| || || ||||| |||||| | ||| | || ||||||||| Sbjct 2002 CAGAGGCTAATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTCTTGCAGATTACAAT 2061 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||| || ||| | || | || | || ||||| Sbjct 2062 ATCCAGAAAGAGTCTACACTCCACCTTGTCCTCCGCCTTCGTGGAGG 2108 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| ||||| | || |||||| || || ||||| ||||| || || ||||| ||| Sbjct 1747 GATAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTTATTTTTGCTGGAAAGCAACTTGAA 1806 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCA 29164 ||| | |||| | || |||||||||||||| || |||||||| || || Sbjct 1807 GATGGTAGAACTCTTGCAGATTACAATATTCAAAAAGAATCTACCCTCCA 1856 >seq621678 Length=9740 Score = 86.0 bits (94), Expect = 5e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || |||||||| | || ||||| || || ||||||||||| |||||| Sbjct 679 AAAATTCAGGACAAAGAAGGAATTCCACCGGATCAGCAGAGGCTTATCTTTGCAGGCAAA 620 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||| |||||||| | ||| |||| |||||||| ||||| ||||| || ||| | || Sbjct 619 CAATTGGAAGATGGAAGGACTTTGGCGGATTACAACATTCAAAAGGAGTCCACTTTGCAT 560 Query 29166 ATGGT 29170 |||| Sbjct 559 TTGGT 555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || |||||||| ||| | || || || ||||||||| |||| Sbjct 898 GACAAGGAAGGTATTCCACCCGATCAACAGAGATTGATTTTCGCTGGCAAACAATTGGAG 839 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACT 29159 ||| || ||| | |||||||||||||| ||||||||||| ||| Sbjct 838 GATGGCAGAACCCTAGCCGATTACAATATCCAGAAGGAATCCACT 794 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424189542610640