Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq621678 95.1 1e-14 seq693518 89.7 4e-13 seq690132 82.4 6e-11 seq564810 82.4 6e-11 seq500796 82.4 6e-11 seq167167 82.4 6e-11 >seq621678 Length=9740 Score = 95.1 bits (104), Expect = 1e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || |||||||| | || ||||| || || ||||||||||| |||||| Sbjct 679 AAAATTCAGGACAAAGAAGGAATTCCACCGGATCAGCAGAGGCTTATCTTTGCAGGCAAA 620 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||||| | ||| |||| |||||||| ||||||||||| || ||| | || Sbjct 619 CAATTGGAAGATGGAAGGACTTTGGCGGATTACAACATTCAAAAGGAGTCCACTTTGCAT 560 Query 25239 ATGGT 25243 |||| Sbjct 559 TTGGT 555 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || || |||||| | || |||||||| ||| | || || || |||||||||||||| Sbjct 898 GACAAGGAAGGTATTCCACCCGATCAACAGAGATTGATTTTCGCTGGCAAACAATTGGAG 839 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 ||| || ||| | |||||||||||||| || |||||||| ||| Sbjct 838 GATGGCAGAACCCTAGCCGATTACAATATCCAGAAGGAATCCACT 794 >seq693518 Length=857 Score = 89.7 bits (98), Expect = 4e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| |||||| | || |||||||| ||| | || || || ||||| Sbjct 606 AAAATTCAAGATAAGGAAGGTATCCCTCCCGATCAACAGAGATTGATTTTCGCTGGCAAG 665 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 |||||||| ||| || ||| | |||||||||||||| ||||||||||| |||| || Sbjct 666 CAATTGGAGGATGGCAGAACCCTAGCCGATTACAATATCCAAAAGGAATCCGCTCTACA 724 >seq690132 Length=1697 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| || |||||||| | || |||| || || || |||| ||| |||||| Sbjct 919 AAAATTCAGGACAAAGAAGGGATTCCACCGAATCAGCAGAGGCTCATCTGTGCAGGCAAA 978 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 |||||||||| | |||||| |||| ||||||| ||||||||||| || ||| | || Sbjct 979 CAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGCATTCAAAAGGAGTCCACTTTGCAT 1038 Query 25239 ATGGT 25243 |||| Sbjct 1039 TTGGT 1043 >seq564810 Length=1937 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| || |||||||| ||| | || || || ||||| |||||||| Sbjct 353 GATAAGGAAGGTACCCCTCCCGATCAACAGAGATTGATATTCGCTGGCAAGCAATTGGAG 412 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACT 25232 |||| || ||| | |||||| ||||||| ||||||||||| ||| Sbjct 413 GATTGCAGAACCCTAGCCGATGACAATATCCAAAAGGAATCCACT 457 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 ||||||| || |||||||| | || ||||| || || || |||||||| |||||| Sbjct 572 AAAATTGAGGACAAAGAAGGGATTCCACCGGATCAGCAGAGGCTCATCTTTGCAGGCAAA 631 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCAC 25238 ||||||||| | | ||| |||| | |||||| ||||||||||| || ||| | || Sbjct 632 TAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAACATTCAAAAGGAGTCCACTTTGCAT 691 Query 25239 ATGGT 25243 |||| Sbjct 692 TTGGT 696 >seq500796 Length=7474 Score = 82.4 bits (90), Expect = 6e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || |||||| || || ||||| ||||| || || ||| | ||| Sbjct 1747 GATAAGGAAGGGATTCCTCCAGATCAGCAGAGGCTTATTTTTGCTGGAAAGCAACTTGAA 1806 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCA 25237 ||| | |||| | || ||||||||||||||||| |||||||| || || Sbjct 1807 GATGGTAGAACTCTTGCAGATTACAATATTCAAAAAGAATCTACCCTCCA 1856 >seq167167 Length=426 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/123 (75%), Gaps = 4/123 (3%) Strand=Plus/Plus Query 25119 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 25178 |||||| ||||| |||||| | || |||||||| ||| | || || || ||||| Sbjct 220 AAAATTCAAGATAAGGAAGGTATCCCTCCCGATCAACAGAGATTGATTTTCGCTGGCAAG 279 Query 25179 CAATTGGAAGATTCCAAAACTATGGCCGATTACAAT----ATTCAAAAGGAATCTACTCT 25234 |||||||| ||| || ||| | |||||||||||| || ||||||||||| ||||| Sbjct 280 CAATTGGAGGATGGCAGAACCCTAGCCGATTACAATATCGATCCAAAAGGAATCCACTCT 339 Query 25235 TCA 25237 || Sbjct 340 ACA 342 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406820128819232