Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq500796 113 7e-20 seq621678 98.7 1e-15 seq167167 98.7 1e-15 seq693518 95.1 2e-14 seq607726 95.1 2e-14 seq746334 87.8 3e-12 seq610506 87.8 3e-12 seq594658 87.8 3e-12 seq534450 87.8 3e-12 >seq500796 Length=7474 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||||| | || | ||| | ||||||||||| ||||| ||||||| | Sbjct 1880 CCACCACGAAGTCGGAGGACAAGATGGAGGGTAGATTCTTTTTGAATATTGTAATCTGCA 1821 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 |||||||| | ||| || | ||| |||||||||||||| | || |||||||| |||||| Sbjct 1820 AGAGTTCTACCATCTTCAAGTTGCTTTCCAGCAAAAATAAGCCTCTGCTGATCTGGAGGA 1761 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 1760 ATCCCTTCCTTATCTTG 1744 Score = 98.7 bits (108), Expect = 1e-15 Identities = 86/107 (80%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| ||||| ||||||| |||||| | || ||| || | ||| |||||| Sbjct 2078 GTAGACTCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCA 2019 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || | || |||||||| |||||||||||||| |||||||| Sbjct 2018 GCAAAGATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 1972 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/230 (67%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 ||||||| || |||| | || | ||| | || |||||||| || || ||||||| Sbjct 2566 TTCCACCCCTCAGTCGCAGCACAAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCTG 2507 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 ||| || || | ||| || | |||||| ||||| || |||||||||||||| || |||| Sbjct 2506 CAAGTGTCCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAG 2447 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 | || |||||||| || || |||||||| ||||| | Sbjct 2446 GGATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTGTCTATTGTATCTGAGCTTTCAA 2387 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCATT 146278 |||| ||||| ||||| || || || | || || | || || |||||| Sbjct 2386 CTTCCAGTGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCATT 2337 Score = 89.7 bits (98), Expect = 8e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 146081 GTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTGTTTTCCA 146140 ||||| ||||| || || ||||||| ||| |||| || ||| || | ||| |||||| Sbjct 1622 GTAGACTCTTTCTGGATGTTGTAATCTGCAAGGGTTCGGCCATCTTCAAGTTGCTTTCCA 1563 Query 146141 GCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||||| || | || |||||||| |||||||||||||| || ||||| Sbjct 1562 GCAAAGATGAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTGTCTTG 1516 >seq621678 Length=9740 Score = 98.7 bits (108), Expect = 1e-15 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | || | ||||||||| ||||| || ||||| ||||| | Sbjct 765 CCACCGCGCAGCCTGAGGACGAGATGTAAAGTGGATTCCTTCTGGATATTGTAATCGGCT 824 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || |||||||| ||||| ||||||||||| || ||||| || ||| Sbjct 825 AGGGTTCTGCCATCCTCCAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCGGGTGGA 884 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| || || || Sbjct 885 ATACCTTCCTTGTCCTG 901 Score = 93.3 bits (102), Expect = 6e-14 Identities = 105/138 (76%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 ||||| | || |||| |||||||| ||||| || || ||| || || || ||||| | Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGA-ATGTTGTAATCCGC 595 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | ||| || | ||| || |||||||| || ||||| || | || ||||||||||| || Sbjct 596 CAAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGG 655 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| || || Sbjct 656 AATTCCTTCTTTGTCCTG 673 >seq167167 Length=426 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/117 (79%), Gaps = 4/117 (3%) Strand=Plus/Minus Query 146075 TGTAAAGTAGATTC--TTTAGAT--ATATTATAATCTGAAAGAGTTCTGCTATCATCTAA 146130 |||| ||| ||||| ||| ||| ||||| ||||| | || ||||||| ||| || || Sbjct 342 TGTAGAGTGGATTCCTTTTGGATCGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAA 283 Query 146131 TTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 ||| || ||||| ||||||||||| || ||||| ||||| || ||||| |||||||| Sbjct 282 TTGCTTGCCAGCGAAAATCAATCTCTGTTGATCGGGAGGGATACCTTCCTTATCTTG 226 >seq693518 Length=857 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | || | ||||| || ||||| || ||||| ||||| | Sbjct 748 CCACCGCGGAGGCTGAGGACGAGATGTAGAGCGGATTCCTTTTGGATATTGTAATCGGCT 689 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || ||||||| ||| || ||||| || ||||| ||||||||||| || ||||| ||||| Sbjct 688 AGGGTTCTGCCATCCTCCAATTGCTTGCCAGCGAAAATCAATCTCTGTTGATCGGGAGGG 629 Query 146171 ATTCCTTCTTTATCTTG 146187 || ||||| |||||||| Sbjct 628 ATACCTTCCTTATCTTG 612 >seq607726 Length=2398 Score = 95.1 bits (104), Expect = 2e-14 Identities = 104/137 (76%), Gaps = 1/137 (1%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | || || | || ||||||| ||| ||||| || ||||| ||||| | Sbjct 2071 CCACCGCGGAGCCTGAGGACGAAATGTAGAGTGGATTCCTTTTGGATATTGTAATCGGCT 2012 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || |||||| ||| || ||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 2011 AGGTTTCTGCCATCCTCCAATTGCTTTCCAGCGAAAATCAATCTCTGTTGATCGGGAGGG 1952 Query 146171 ATTCCTTCTTTATCTTG 146187 | | |||| |||||||| Sbjct 1951 A-TACTTCCTTATCTTG 1936 >seq746334 Length=598 Score = 87.8 bits (96), Expect = 3e-12 Identities = 83/106 (78%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATTG 146133 ||||| ||| ||||| || ||||| ||||| | || ||||||| ||| || ||||| Sbjct 315 ATGTAGAGTGGATTCCTTTTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTG 256 Query 146134 TTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCT 146179 |||||||| ||||||||||| || ||||| |||| || |||||| Sbjct 255 CTTTCCAGCGAAAATCAATCTCTGTTGATCGGGAGAGATACCTTCT 210 >seq610506 Length=714 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATT 146132 ||||| || |||| |||| | ||||| ||||| | || ||||||| ||| || |||| Sbjct 49 ATGTAGAGCGGATTTCTTTTGG-ATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATT 107 Query 146133 GTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| ||||||||||| | ||||| ||||| || ||||| |||||||| Sbjct 108 GCTTGCCAGCGAAAATCAATCTCTATTGATCGGGAGGGATACCTTCCTTATCTTG 162 >seq594658 Length=3356 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Minus Query 146074 ATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATT 146132 ||||| ||| |||| |||| | ||||| ||||| | || ||||||| ||| || |||| Sbjct 485 ATGTAGAGTTGATTTCTTTTGG-ATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATT 427 Query 146133 GTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| ||||||||||| | | ||| ||||| || ||||| |||||||| Sbjct 426 GCTTGCCAGCGAAAATCAATCTCTATTAATCGGGAGGGATACCTTCCTTATCTTG 372 >seq534450 Length=814 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/115 (78%), Gaps = 2/115 (2%) Strand=Plus/Plus Query 146074 ATGTAAAGTAGATT-CTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCTAATT 146132 ||||| || |||| |||| | ||||| ||||| | || ||||||| ||| || |||| Sbjct 340 ATGTAGAGAGGATTTCTTTTGG-ATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATT 398 Query 146133 GTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | || ||||| ||||||||||| | ||||| ||||| || ||||| |||||||| Sbjct 399 GCTTGCCAGCGAAAATCAATCTCTATTGATCGGGAGGGATACCTTCCTTATCTTG 453 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 736144223784960