Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq502676 116 2e-21 seq588422 105 4e-18 seq361176 105 4e-18 seq5020 98.7 6e-16 seq621678 96.9 2e-15 seq731700 93.3 3e-14 >seq502676 Length=6550 Score = 116 bits (128), Expect = 2e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| ||||| || || ||||| | ||| ||| ||||| |||||||| |||| Sbjct 1075 CCGCCGCGGAGCCTGAGGACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCT 1016 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | || |||| || || || |||||||| | ||||||||| ||| || Sbjct 1015 AGGGTTCTACCATCCTCCAGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGA 956 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | | |||| ||| | || || Sbjct 955 ATACCTTCCTTGTCTTGAAT-TTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAAC 897 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 |||| ||||| ||||||||||| ||||| || ||||||||||||||| ||| Sbjct 896 CTCCAGAGTGATCGTTTTGCCGGTAAGAGTCTTGACAAAGATCTGCATCCCTC 844 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || |||||||| || || |||| Sbjct 619 CCGCCGCGTAGACGAAGGACGAGGTGGAGCGTGGACTCCTTCTGTATATTATAATCGGCG 560 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| ||||| ||||| |||||||| ||| ||| Sbjct 559 AGGGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGA 500 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | || |||| | ||||| ||||| Sbjct 499 ATACCTTCCTTATCCTGGATCTTGGCCTTGACATTATCTATGGTATCGGAGCTCTCGACT 440 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||| |||||||| || ||||| || |||||||||||| Sbjct 439 TCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCATC 392 >seq588422 Length=1254 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | ||| ||| ||||| ||||| ||||||| ||| ||| |||| Sbjct 303 AGGACCAGGTGGAGAGTGGATTCCTTCTGGATGTTATAGTCGGCGAGCGTGCGGCCGTCC 362 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| || || || |||| ||||||||| ||| | | |||||||| Sbjct 363 TCGAGTTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 422 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||||| | | | || | |||| ||||| || | |||||||| Sbjct 423 TGGATCTTAGCCTTTACGTTGTCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATGGTC 482 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || |||||||| || || || |||||||||||| Sbjct 483 TTTCCGGTGAGTGTCTTGACGAAGATCTGCATC 515 Score = 104 bits (114), Expect = 1e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||||||| | || ||| ||||| ||||||||||| | || ||| |||| Sbjct 75 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCC 134 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||||| ||||| || |||| ||||||||| ||| | || ||||||||| Sbjct 135 TCGAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 194 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | |||| ||||| || | ||||| ||| Sbjct 195 TGGATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTT 254 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||||||||| || || || ||||||||||| Sbjct 255 TTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 286 >seq361176 Length=4428 Score = 105 bits (116), Expect = 4e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||||| ||| || ||||| ||||||||||||| ||| ||| | || Sbjct 4243 AGGACGAGGTGTAGAGTTGACTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCC 4184 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || ||||| || |||||||| || || | || |||||||| Sbjct 4183 TCGAGCTGCTTTCCGGCAAAAATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCC 4124 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | ||||| ||||| || |||| || || || Sbjct 4123 TGGATCTTAGCCTTGACGTTGTCGATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTC 4064 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || || ||||| ||||| || |||||||||||| Sbjct 4063 TTACCCGTGAGGGTTTTGACGAAGATCTGCATC 4031 >seq5020 Length=1186 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || || || | || ||| ||||| |||||||| || | Sbjct 1037 CCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCT 978 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 | | | |||| |||| |||||| || || || ||||| |||||||| || | ||| Sbjct 977 AAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGG 918 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| ||||| ||| | || | | || | |||| |||||| Sbjct 917 ATCCCT-TCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGAC 859 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||||||||||||||||| || ||||| || ||||||||||| Sbjct 858 TTCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq621678 Length=9740 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| || || || |||| Sbjct 993 CCGCCGCGTAGACGAAGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAATCGGCG 1052 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | |||||| || || || ||||| |||||||| ||| || Sbjct 1053 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGA 1112 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | || | ||||| ||||| Sbjct 1113 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCGACT 1172 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || ||||||||||||||||| |||||||| |||||||||||| Sbjct 1173 TCGAGAGTTATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCATC 1220 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||||||||| || || || |||||||| ||| ||||| || ||||| |||| Sbjct 765 CCACCGCGCAGCCTGAGGACGAGATGTAAAGTGGATTCCTTCTGGATATTGTAATCGGCT 824 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || ||||| || ||||| |||||||| | | ||| || ||| || Sbjct 825 AGGGTTCTGCCATCCTCCAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCGGGTGGA 884 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | | | |||| ||| | || || Sbjct 885 ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTATCAATCGTATCAGAACTCTCAACC 944 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | || || || || || || || ||||| ||||||||||||||| Sbjct 945 TCGAGAGTAATCGTCTTCCCCGTTAGGGTTTTGACAAAGATCTGCATC 992 >seq731700 Length=3081 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||| || | ||| ||| ||||| |||||||| || | Sbjct 1374 TCCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGC 1315 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| | || || | ||| ||||| ||||| ||||||| |||||||| ||| Sbjct 1314 GAGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGG 1255 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | | || | ||||| || || Sbjct 1254 AATCCCTTCCTTGTCCTGAATCTTAGACTTAACGTTGTCGATTGTATCGGAGCTCTCCAC 1195 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| ||||||||||| || || || |||||||||||| Sbjct 1194 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCATC 1146 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || |||||||| ||||||| ||| | || ||| ||||| ||||||||||| | | Sbjct 1829 CCACCACGCAGCCTAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCC 1770 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | |||||| || || || || |||| ||||||||| || Sbjct 1769 AATGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1710 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||| ||||| ||||| ||| | || | || | ||| | || || Sbjct 1709 ATCCCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATGGTATCAGAGCTCTCAACC 1650 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| || || || || || ||||| || || |||||||| |||||| Sbjct 1649 TCCAGGGTAATAGTCTTCCCTGTGAGGGTCTTTACAAAGATTTGCATC 1602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 319944538657280