Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq551794 96.9 7e-15 seq548568 87.8 4e-12 >seq551794 Length=11183 Score = 96.9 bits (106), Expect = 7e-15 Identities = 104/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || ||| || || || || | ||||| ||| ||||| || || | || |||||||| || Sbjct 4905 CAGAGACTTTGACTATGACTACTTTGGTTTTAAAACCCTTGAAAGGTCTTATCTCCTAAA 4846 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 ||| |||| || | || ||| | |||||||||||||||| |||| ||||| || | Sbjct 4845 GATTAATGGGAAAGTTGTTGAAAGGCCTCAGCACATGTTGATGAGAGTTGCTGTTGGCGT 4786 Query 248925 TCACAAGGATGACATAGA 248942 |||||||||||||| || Sbjct 4785 CCACAAGGATGACATTGA 4768 >seq548568 Length=13427 Score = 87.8 bits (96), Expect = 4e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 248805 CAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAA 248864 || |||||| || || || | ||||| ||| ||||| || || | ||| || ||| | || Sbjct 4221 CAGAGATTTTGACTATGACTACTTTGGTTTTAAAACCCTCGAAAGATCTTACCTCTTAAA 4280 Query 248865 AATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGAT 248924 || | || ||| | || ||| | |||||||||||||||| | || |||| || || Sbjct 4281 GGTTCAAGGGAAGGTTGTTGAAAGGCCTCAGCACATGTTGATGAGGGTTTCTGTGGGTAT 4340 Query 248925 TCACAAGGATGACATAGA 248942 |||||||||||| || || Sbjct 4341 TCACAAGGATGATATTGA 4358 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062838877993984