Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq502676 114 1e-20 seq731700 113 4e-20 seq500796 113 4e-20 seq588422 98.7 8e-16 seq621678 87.8 1e-12 >seq502676 Length=6550 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||| ||| || | | | || ||||||||||| || ||||| Sbjct 1039 TCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCCAGTTGTTTCCCAGCGAAA 980 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||||||| || |||||||| | ||| |||||||| |||||| || || Sbjct 979 ATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTG 920 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | || || ||| ||||||| || ||||| ||||| || |||||||| ||| Sbjct 919 TCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTGCCGGTAAGAGTCTTGACA 860 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 859 AAGATCTGCAT 849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| |||||| ||||||||| || || || || ||| || |||| || || || Sbjct 824 GTGAAGCGTGGACTCCTTCTGGATATTATAATCCGCCAGCGTCCGGCCGTCCTCTAGCTG 765 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 ||||| ||||| || | |||||||| || || || | ||||||||||| || || Sbjct 764 CTTTCCAGCGAAGATGAGACGCTGTTGATCCGGCGGAATCCCCTCCTTGTCTTGGATCTT 705 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 |||||| | | | ||| || ||| ||||| | ||||||||||| ||||| Sbjct 704 CGCCTTAACGTTATCAATCGTATCCGAACTCTCAACCTCTAAAGTAATCGTCTTCCCCGT 645 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 || || || || ||||| ||||| Sbjct 644 TAGGGTTTTGACGAAGATCTGCAT 621 >seq731700 Length=3081 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||| | || || | |||||||| || ||| |||||||| ||||||||||| | Sbjct 2057 CCACCACGCAGCCTAAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 1998 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | ||| | || || || || || || || || |||| || ||| ||||| || || Sbjct 1997 AAGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGGA 1938 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| ||||||||| || || ||| || | | | ||||| || |||||| Sbjct 1937 ATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAACTCTCCACT 1878 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 1877 TCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAAATTTGCAT 1831 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| || | ||||||||||| || |||||||||||| || || || | Sbjct 2285 CCTCCCCTCAGCCTCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATATTATAATCCGCC 2226 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | | | || || || || || || || || |||| || ||| ||||| || || Sbjct 2225 AAGGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGG 2166 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| ||| || |||||| | | | ||||| || |||||| Sbjct 2165 ATACCTTCCTTGTCTTGAATCTTAGCCTTAACATTGTCAATGGTGTCCGAACTCTCCACT 2106 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||| ||||| || ||||| ||||| || ||||||||||| Sbjct 2105 TCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACGAAGATTTGCAT 2059 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| ||||||||||||||||| || || ||| | || || Sbjct 1355 ACCAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCGAGGGTGCGGCCATCCTCG 1296 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| |||||||| || | || || ||||| || || | || ||||||||| | Sbjct 1295 AGCTGTTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTCCTGA 1236 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || |||||| | | | || | ||||||||| | ||| || |||||| Sbjct 1235 ATCTTAGACTTAACGTTGTCGATTGTATCGGAGCTCTCCACCTCGAGGGTGATGGTCTTG 1176 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 1175 CCGGTGAGGGTCTTAACGAAGATCTGCAT 1147 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| || ||||| || || | | || || || || Sbjct 2490 GTGGAGGGTGGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGCCATCCTCTAGCTG 2431 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || | || ||| || || ||||| | |||||||||||| |||||| Sbjct 2430 CTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGAGGGATACCCTCCTTGTCTTGAATTTT 2371 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 | ||| || | | ||||| || ||||||||||| || || ||||| || || Sbjct 2370 TGCCTTGACATTGTCAATCGTGTCCGAACTCTCCACCTCCAGAGTGATTGTCTTCCCTGT 2311 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| ||||| || ||||| Sbjct 2310 CAGGGTCTTAACAAATATCTGCAT 2287 >seq500796 Length=7474 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || ||||| | ||||||| || || || ||| ||||| |||||||| ||| Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| | | | || || || || || || || || ||||| |||||||| || ||||| Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| ||| || |||||| | | |||| || || ||| Sbjct 2672 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACC 2613 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| |||||||||||| || |||| ||||||||| ||||| ||||| Sbjct 2612 TCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 >seq588422 Length=1254 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| ||| || || |||||||| ||||||||||| || ||| |||| || Sbjct 78 ACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCCTCG 137 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 ||||| || |||||||| |||| || ||| ||||| || || | |||||||||||| Sbjct 138 AGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 197 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | |||| | ||| ||||| | ||| ||||| ||| Sbjct 198 ATCTTAGCCTTGACGTTATCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCGTTTTG 257 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || || ||||| || ||||| ||||| Sbjct 258 CCGGTGAGGGTCTTGACGAAGATCTGCAT 286 >seq621678 Length=9740 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| || ||||| ||| || | | || |||| |||||| || ||||| Sbjct 801 TCCTTCTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTGTTTGCCAGCGAAA 860 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||| | |||||| ||||| || | ||| ||||||||| || || |||||| Sbjct 861 ATCAATCTCTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTA 920 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | || || ||| ||||| | ||||||||||| ||||| || || || ||| Sbjct 921 TCAATCGTATCAGAACTCTCAACCTCGAGAGTAATCGTCTTCCCCGTTAGGGTTTTGACA 980 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 981 AAGATCTGCAT 991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391250719960048