Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq621678 89.7 4e-13 seq502676 84.2 2e-11 >seq621678 Length=9740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || || || |||| || | || || || |||||||||||||| || ||| Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||||||||||||||| ||| ||||||| || || |||||| || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||| || || ||||| | || || || | ||| ||||| | ||| Sbjct 657 ATTCCTTCTTTGTCCTGAATTT-TGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAAC 715 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || | ||||||| || | ||||| || ||||| ||||| Sbjct 716 TTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| |||| || || || || || ||||||| |||||| || || Sbjct 309 CCACCACGAAGGCGAAGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCA 368 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||| || | || ||||||||| | || || || |||||||| || Sbjct 369 AGGGTTCGTCCATCCTCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGG 428 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTT-GACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||| | |||||| ||| | ||| ||||||| | ||| Sbjct 429 ATGCCCTCTTTGTCCTGAATCT-TTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCAC 487 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || | || ||| |||| || ||||||||||| ||||| || ||||| Sbjct 488 CTCCAGAGTAATGGTTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq502676 Length=6550 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || ||||| || | || | || || || ||||||| |||||| || ||| Sbjct 1303 CCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCC 1244 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | ||||||||||||||||| ||| | || || || || ||||| || Sbjct 1243 AGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGA 1184 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| || || ||||| | || || || | ||| ||||| | ||| Sbjct 1183 ATGCCTTCTTTGTCTTGAATTT-TGGCTTTCACGTTATCAATTGTGTCGGAGCTCTCAAC 1125 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || || |||| ||||||| ||||| |||||||| ||||| Sbjct 1124 TTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 375671804032560