Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq500796 113 4e-20 seq621678 107 2e-18 seq502676 98.7 1e-15 seq731700 84.2 2e-11 seq382206 82.4 7e-11 >seq500796 Length=7474 Score = 113 bits (124), Expect = 4e-20 Identities = 158/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139547 AAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTC 139606 |||||||| || | |||| ||||||||||| || ||||| |||||| | ||| || Sbjct 2783 AAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCAAGTGTCCTA 2724 Query 139607 GAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCT 139666 ||||| ||||| || |||||| |||||| ||| || ||||| ||||| ||||| || Sbjct 2723 CCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGGATGCCCTCC 2664 Query 139667 TTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGT 139725 || || ||| | || | ||| | | || | |||||| | || ||||| | ||| Sbjct 2663 TTATC-CTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACCTCCAAGGT 2605 Query 139726 CACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | |||||| || ||||| || || ||||| || ||||| Sbjct 2604 AATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 ||| || || | ||| | ||| | ||||| || ||||| || || || || ||||| Sbjct 3021 GCCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCTGC 2962 Query 139597 CATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 139655 || |||| || | ||||| ||||| || |||||| | || || ||||| ||||| || | Sbjct 2961 CAGAGTGCGTCCA-TCTTCAAGCTGCTTCCCAGCAAAAATGAGGCGTTGTTGATCCGGTG 2903 Query 139656 GTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGT-TCCACTGTGTCGGTGGGCTCC 139714 | || ||||| ||||| ||| |||||| || | | || | ||| || | | ||| Sbjct 2902 GGATCCCTTCCTTGTCT-TGAATTTTTGCCTTCACATTATCAATTGTATCTGAGCTCTCA 2844 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| | || | || || || ||||| ||||| || ||||||||||| Sbjct 2843 ACCTCCAAAGTGATTGTTTTCCCAGTCAAAGTTTTGACAAATATTTGCAT 2794 Score = 82.4 bits (90), Expect = 7e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || |||||||| ||||| ||||| | ||| || ||||| || ||||||||| Sbjct 2534 GTTGATTCTTTTTGGATGTTGTAATCTGCAAGTGTCCTTCCATCTTCAAGTTGTTTACCA 2475 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTT 139680 || |||||| | |||||| || ||||| |||||||||||||| |||||| Sbjct 2474 GCGAAGATCAATCTTTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATTTT 2422 >seq621678 Length=9740 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| |||| ||| | || | ||| | ||| ||||| || || || ||||||||| Sbjct 993 CCGCCGCGTAGACGAAGGACGAGGTGGAGCGTGGACTCCTTCTGGATATTATAATCGGCG 1052 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || |||||| |||| ||||| ||||||||||| || Sbjct 1053 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGA 1112 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||| |||| | ||| || Sbjct 1113 ATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTTATCAATTGTATCGGAGCTCTCGACT 1172 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | || |||||||| | ||||| ||||| || ||||| Sbjct 1173 TCGAGAGTTATGGTTTTGCCGGTGAGGGTTTTCACGAAGATCTGCAT 1219 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||||||| ||||| || || || ||||| | ||||| || Sbjct 567 GTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCCAATTGTTTGCCT 626 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| |||| || | |||||||| || || || ||||||||||| ||| |||| | ||| Sbjct 627 GCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTC-CTGAATTTTGGCTTT 685 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 || | || | |||||||| | ||| || || | || || || ||||| || | || Sbjct 686 TACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTGCCAGTTAGGGT 745 Query 139747 TTTTACGAATATTTGCAT 139764 ||| ||||| || ||||| Sbjct 746 TTTGACGAAAATCTGCAT 763 >seq502676 Length=6550 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| ||||||| ||| ||||| || || ||| |||||| | ||||| || Sbjct 1273 GTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCT 1214 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | ||||| | |||||||| || || |||||||||||||| ||| |||| | ||| Sbjct 1213 GCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTC-TTGAATTTTGGCTTT 1155 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | |||||||| | ||| || || | || | || || ||||||| || Sbjct 1154 CACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGT 1095 Query 139747 TTTTACGAATATTTGCAT 139764 ||| || || || ||||| Sbjct 1094 TTTGACAAAAATCTGCAT 1077 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 ||||| |||| ||| | || | ||| | ||| ||||| || || || ||||||||| Sbjct 619 CCGCCGCGTAGACGAAGGACGAGGTGGAGCGTGGACTCCTTCTGTATATTATAATCGGCG 560 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | || |||||||| || || || |||| ||||| ||||||||||| || Sbjct 559 AGGGTCCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGA 500 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| || || ||| || || | | || | || |||| | ||| || Sbjct 499 ATACCTTCCTTATCCTGGATCTTGGCCTTGACATTATCTATGGTATCGGAGCTCTCGACT 440 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | || | ||||||||||| | ||||| ||||| || ||||| Sbjct 439 TCGAGAGTAATGGTCTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 393 >seq731700 Length=3081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || || || || |||||||| ||||| | |||| || ||||||||||| || Sbjct 1343 GTGGATTCCTTCTGAATGTTGTAATCAGCGAGGGTGCGGCCATCCTCGAGCTGTTTGCCG 1284 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | |||||| || || || || ||||| ||||| ||| | || | || Sbjct 1283 GCGAAGATGAGCCTTTGCTGGTCTGGGGGAATCCCTTCCTTGTC-CTGAATCTTAGACTT 1225 Query 139688 AGC-TGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | | || | ||| |||| | ||||||||| | ||| | ||||||||||| | || Sbjct 1224 AACGTTGTCGATTGTATCGGAGCTCTCCACCTCGAGGGTGATGGTCTTGCCGGTGAGGGT 1165 Query 139747 TTTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 1164 CTTAACGAAGATCTGCAT 1147 >seq382206 Length=6817 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 139552 CAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTC 139611 |||||| | ||||| ||| || ||||| || || || ||||| || ||| || || Sbjct 2740 CAAAACAAGGTGAAGCGTTGATTCTTTCTGGATATTGTAATCTGCCAATGTCCTTCCATC 2681 Query 139612 TTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 139671 || | |||||| |||||| | ||||| | ||||| || || ||||||||||||||||| Sbjct 2680 CTCCAACTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCTGGTGGTATGCCTTCTTTGTC 2621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 491138778969600