Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq548568 116 5e-21 seq405401 116 5e-21 seq551794 89.7 7e-13 >seq548568 Length=13427 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| ||||| || || ||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || |||| ||| |||| || ||||| | ||| ||||| || || | || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| | | || || | ||||||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| |||| || ||| |||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 4774 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCCA 4715 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || || | ||||| || || |||||| ||||| | ||||| ||||| | || Sbjct 4714 TTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 4655 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 4654 ACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATATG 4595 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| || || ||||| ||||| | || |||||||| Sbjct 4594 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 4554 >seq405401 Length=1294 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| ||||| || | ||| |||| || || ||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || |||| ||| |||| || |||||| | ||| ||||| || || | || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | ||| | | || || | ||||||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| |||| || ||| |||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 80095 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 80154 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 645 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCCA 586 Query 80155 TTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 80214 || || || ||| | || || |||||| ||||| | ||||| ||||| | || Sbjct 585 TTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 526 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 525 ACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATATG 466 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCT 80315 ||||| || || ||||| ||||| | || |||||||| Sbjct 465 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 425 >seq551794 Length=11183 Score = 89.7 bits (98), Expect = 7e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | || ||||| || || ||||||||| | |||| ||||| Sbjct 4690 GTCCCAGCATTGAAAAGCGTGGGAGATGCATGAGTAAACCATCGCTGGGACAATAGATGA 4749 Query 80395 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGAATTCCTACCGCGACACGCATTAA 80453 || || | || |||| || || || | ||| || | || || || || | ||| || Sbjct 4750 TATGTTTGTATTACTGAATCAATGTCATCCTTG-TGGACGCCAACAGCAACTCTCATCAA 4808 Query 80454 CATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAA 80513 |||||||||||| |||||||| | || ||| || || | | ||||| |||| | Sbjct 4809 CATGTGCTGAGGCCTTTCAACAACTTTCCCATTAATCTTTAGGAGATAAGACCTTTCAAG 4868 Query 80514 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 80561 |||||||||||||| |||| || |||||||| || || || || Sbjct 4869 GGTTTTAAAACCAAAGTAGTCATAGTCAAAGTCTCTGTCATATATTAT 4916 Score = 86.0 bits (94), Expect = 9e-12 Identities = 180/265 (68%), Gaps = 5/265 (2%) Strand=Plus/Plus Query 79300 TATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAA 79359 || |||||||| || ||||| ||||| |||||||||||| |||| || ||| | ||| Sbjct 2857 TAAGTTTCATATGGGCCTTCTTTTTCAGCTAATTCACAAGATGCCTTTAGTGCACTGTAG 2916 Query 79360 TAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAATGGATAA 79419 || ||||| || ||||| | || || | | || || || | ||||||| | | Sbjct 2917 TATATGGTCTCAAAAATATCTTTGTTCAACTGCTGAGCCTCAGGAGAATCAAAT-GCCAT 2975 Query 79420 TTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 79478 ||| | ||||| | |||||| | || || || |||| || || || || || | Sbjct 2976 GCCAAGCAAGATAAATGTGTCTGCAAGACCCTGTACCCCAAGTCCTATTGGCCTGTGACG 3035 Query 79479 CTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 79538 | ||||||| |||| || | || ||| ||||| |||| || ||||| || || || Sbjct 3036 CATATTAGACCTTTCTGCAGTTTCAACAGGGTAATAGTTAACATTAATAATCTTGTTAAG 3095 Query 79539 ATTCC---TGACTATTACTTTGACC 79560 || | | || ||| || ||||| Sbjct 3096 GTTTCTAGTAACAATTGCTGTGACC 3120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711137396392320