Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq621678 114 1e-20 seq502676 107 1e-18 seq690132 102 6e-17 seq500796 93.3 3e-14 seq564810 91.5 1e-13 >seq621678 Length=9740 Score = 114 bits (126), Expect = 1e-20 Identities = 166/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| |||| |||||||| | |||| ||||||||| | |||||||| | | Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | | || |||||||||||||| ||||| || | | ||| ||||| | || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||||| || ||| || |||| || | ||| ||||||| ||| ||| | Sbjct 657 ATTCCTTCTTTGTC-CTGAATTTTGGCTTTTACGTTATCAATTGTGTCG-GAGCTCTCAA 714 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| | ||||| || ||||| ||||| || ||||| ||||| Sbjct 715 CTTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| || | || | ||| | |||| ||||| || | ||||||||||| Sbjct 765 CCACCGCGCAGCCTGAGGACGAGATGTAAAGTGGATTCCTTCTGGATATTGTAATCGGCT 824 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||||||||| || |||||||||| ||||||||||| || Sbjct 825 AGGGTTCTGCCATCCTCCAATTGTTTGCCAGCGAAAATCAATCTCTGTTGATCGGGTGGA 884 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | || || | ||| || || | ||| || Sbjct 885 ATACCTTCCTTGTCCTGGATCTTGGCCTTAACGTTATCAATCGTATCAGAACTCTCAACC 944 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || || || ||||| ||||| ||||| || ||||| Sbjct 945 TCGAGAGTAATCGTCTTCCCCGTTAGGGTTTTGACAAAGATCTGCAT 991 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||||||| | |||| ||||||||| || |||||||| | Sbjct 309 CCACCACGAAGGCGAAGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCA 368 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || ||| | || || | || ||||| ||||| |||| | ||||||||| | || Sbjct 369 AGGGTTCGTCCATCCTCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGG 428 Query 43003 ACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | || ||||| || |||| || ||||||| | ||| ||||| ||| ||| | Sbjct 429 ATGCCCTCTTTGTC-CTGAATCTTTGCTTTGACATTATCAATAGTGTCAG-AGCTCTCCA 486 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | || || |||||||| || | ||||||||||| || ||||| Sbjct 487 CCTCCAGAGTAATGGTTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq502676 Length=6550 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || |||||||| || | || | ||| | ||| ||||||||| || |||||||| | | Sbjct 1303 CCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCC 1244 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| |||||||||||||| ||||| |||| | ||| ||||| | || Sbjct 1243 AGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGA 1184 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||||| || || |||| || | ||| ||||||| ||| ||| || Sbjct 1183 ATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTATCAATTGTGTCG-GAGCTCTCAAC 1125 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| ||||| || ||||| |||||||| ||||| Sbjct 1124 TTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 Score = 89.7 bits (98), Expect = 4e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | |||| ||| | ||| ||||||||| | || ||||| | | Sbjct 1531 CCACCACGAAGGCGGAGAACCAGATGCAGAGTAGACTCCTTTTGGATGTTATAATCAGCC 1472 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | || ||||| ||||| || | | ||||||||||| || Sbjct 1471 AGAGTACGGCCATCCTCAAGCTGCTTGCCAGCAAATATAAGCCTCTGTTGATCGGGTGGG 1412 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGAC 43061 | ||||||||| || ||| ||| ||||||| | ||| |||||| | ||| || Sbjct 1411 ATACCTTCTTTATC-CTGTATCTTTGCTTTGACATTATCAATTGTGTCAGAACTCTCCAC 1353 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || || || || ||||| || ||||| Sbjct 1352 TTCAAGAGTGATGGTTTTTCCAGTCAGTGTCTTGACAAATATCTGCAT 1305 >seq690132 Length=1697 Score = 102 bits (112), Expect = 6e-17 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || ||||| |||| |||||||| | |||| ||||||||| | ||||||| | | Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || ||| | |||||||||||||| ||| | || | | ||| |||| | || Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 43003 ACACCTTCTTTTTCGCTG-ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGA 43060 | |||||||| || ||| || |||| || | ||| ||||||| ||| ||| | Sbjct 941 ATCCCTTCTTTGTC-CTGAATTTTGGCTTTTACATTATCAATTGTGTCG-GAGCTCTCAA 884 Query 43061 CGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || | ||| || ||||| || |||||||||| || ||||| ||||| Sbjct 883 CTTCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq500796 Length=7474 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || || | || | ||||| || |||||||| | ||||||||| | Sbjct 2336 CCACCACGGAGCCTGAGAACAAGATGGAGGGTAGATTCCTTTTGGATATTGTAATCAGCA 2277 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||||| | || || | ||| || || ||||| |||| || ||| || || | || Sbjct 2276 AGGGTACGGCCATCTTCAAGTTGCTTCCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 2217 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGAC 43061 | |||||| || || |||| ||||||| || ||| || || ||| ||| || Sbjct 2216 ATACCTTCCTTATCCTGGATCTTTGCTTTGACATTGTCAATGGTATCTG-AGCTCTCAAC 2158 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || |||||||| || ||||| ||||||||||||||||| Sbjct 2157 CTCGAGAGTAATTGTTTTTCCAGTAAGAGTCTTCACAAAAATTTGCAT 2110 >seq564810 Length=1937 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 |||| |||||||| | |||| ||||||||| | |||||| | | ||| || | | | Sbjct 702 CTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCCA 643 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 | ||||||| |||||| ||||| || | | ||| ||||| | || | |||||||| Sbjct 642 ACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTG 583 Query 43015 TCGCTGATCAACT----CTTTGACTCTGCCAACTGTGTCGCCAGC-CTCGACGTCTACCG 43069 || |||| | |||| || | ||| ||||||| ||| ||| | || | || Sbjct 582 TCC----TCAATTTTGGCTTTTACGTTATCAATTGTGTCGG-AGCTCTCACCTTCCAGCG 528 Query 43070 TTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || |||| || ||||||||||| || ||||| ||||| Sbjct 527 TAATTGTTTGGCCAGTTAGAGTTTTGACGAAAATCTGCAT 488 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 377677795444704