Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq794097 132 6e-26 seq548568 102 1e-16 seq405401 102 1e-16 seq551794 95.1 2e-14 >seq794097 Length=14469 Score = 132 bits (146), Expect = 6e-26 Identities = 259/377 (69%), Gaps = 8/377 (2%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || || ||||| |||||||||| ||||||||| | || ||||||||||| | Sbjct 11983 ACAGCAGGCACGCGAAGTCGCAGTGCAAACCCTCATCCCGCGATATCAATTCGTTGGAGA 12042 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 |||| | |||||||| | || ||||| |||||||| ||||| | |||| || ||| Sbjct 12043 ACGTCAACCCGGGCATCAACCCGCGCTTCTTAAGCCAGAATATTG-CGCAGAAGCTTCCG 12101 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC--TCCA-TAACCGGCA 42232 || ||||| || || || || || ||||| | || | ||| | | | ||| | Sbjct 12102 GAGAAGAATATCCCCTCCACGCAGGCGAAGGCGAGCAGACGCTCGGTGAAGGATTCGGAA 12161 Query 42233 CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCT 42292 | | || ||||| | ||||||| |||||| || | || || || || || | Sbjct 12162 C---CCTGAATCCAGCGCAGGGCCCAATTGGCCTTGTTCTGGACGCAGGGAATGGTGTGG 12218 Query 42293 ATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGA 42352 ||||| ||||| | || || | ||| || | ||| || ||||||||||| Sbjct 12219 ATGGCGCGGAAGAGCATGGCCTTCTCGGCAGAATCCTTGATATAGGTCTCGATCAAAAGG 12278 Query 42353 CTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCC 42412 || ||||| || || || ||||| || ||||| ||||| || |||||||| | |||| Sbjct 12279 CTGTACATCTCGGAGTGGATGTTCTCGATGGCAATCTGGAAGCCGTAGAAGGCGCGGGCC 12338 Query 42413 TCGGTAACCTGTACTTC 42429 |||| ||||| || || Sbjct 12339 TCGGAGACCTGGACCTC 12355 >seq548568 Length=13427 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| ||||| || || ||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| ||| |||| || ||||| | ||| || || || || | || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| |||| || ||| |||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 4774 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCCA 4715 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || ||||| || || |||||| ||||| | ||||| |||||| | || Sbjct 4714 TTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 4655 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 4654 ACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATATG 4595 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 4594 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 4554 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 |||||| || |||| || ||||| ||| || || || |||||| || | || || Sbjct 5429 TTCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCC 5370 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 |||| ||||||| ||||| | ||||||||||| ||||| | |||| | |||||| Sbjct 5369 AGGAGATTCATTTGGACAAAACAATGACCACTGTCCATTGGACTGAACTCTCTCCATAAA 5310 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 72071 |||||||| ||||| || || ||| | |||||| Sbjct 5309 TAGATCAGGTATCCAGAGGGCATAAAACAAATCTCT 5274 >seq405401 Length=1294 Score = 102 bits (112), Expect = 1e-16 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 ||||| ||||| || | ||| |||| || || ||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 72478 TACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTAA 72536 || |||| ||| |||| || |||||| | ||| || || || || | || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| |||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 |||||||||||||| |||| || ||| |||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 645 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCCA 586 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 || || | ||| | || || |||||| ||||| | ||||| |||||| | || Sbjct 585 TTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 526 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 525 ACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATATG 466 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 72398 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 465 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 425 Score = 84.2 bits (92), Expect = 3e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 71916 TTCTCTTTCGTATTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCC 71975 |||||| || |||| || ||||| ||| || || || |||||| || | || || Sbjct 1284 TTCTCTCTCATATTTAGTGTATAAAGCTTCAAATTCCTCGCCCCAACAATCAGCCAACCC 1225 Query 71976 AGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAA 72035 |||| ||||||| ||||| | ||||||||||| ||||| |||| | |||||| Sbjct 1224 AGGAGATTCATTTGGACAAAACAATGACCACTGTCCATAGGACCGAACTCTCTCCATAAA 1165 Query 72036 GAGATCAGGAATCCAAAGAGCTATAAATAGATCTCT 72071 |||||||| ||||| || || ||| | |||||| Sbjct 1164 TAGATCAGGTATCCAGAGGGCACAAAACAAATCTCT 1129 >seq551794 Length=11183 Score = 95.1 bits (104), Expect = 2e-14 Identities = 183/267 (69%), Gaps = 5/267 (2%) Strand=Plus/Plus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || ||||| ||||||||||| |||| ||||||| |||| || ||| | | Sbjct 2855 CATAAGTTTCATATGGGCCTTCTTTTTCAGCTAATTCACAAGATGCCTTTAGTGCACTGT 2914 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 | || ||||| || ||||| | || || | | || || || || ||||||| | Sbjct 2915 AGTATATGGTCTCAAAAATATCTTTGTTCAACTGCTGAGCCTCAGGAGAATCAAAT-GCC 2973 Query 71501 AATTTAAG-AGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGT 71559 | ||| | ||||| | |||||| | || || || |||| || || || ||||| Sbjct 2974 ATGCCAAGCAAGATAAATGTGTCTGCAAGACCCTGTACCCCAAGTCCTATTGGCCTGTGA 3033 Query 71560 CTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTG 71619 | | ||||||| |||| || | || ||| ||||| |||| || ||||| || || Sbjct 3034 CGCATATTAGACCTTTCTGCAGTTTCAACAGGGTAATAGTTAACATTAATAATCTTGTTA 3093 Query 71620 AGATTTC---TGACTATTACTTTGACC 71643 || |||| | || ||| || ||||| Sbjct 3094 AGGTTTCTAGTAACAATTGCTGTGACC 3120 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664475727338880