Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq500796 104 2e-17 seq502676 95.1 1e-14 seq5020 95.1 1e-14 seq621678 93.3 4e-14 >seq500796 Length=7474 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| | |||||||| || | ||||| ||||| ||||| || |||||||||||| Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| || || || |||||| |||||| ||| || ||||| ||||| Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| || || || ||| || || | | || | ||||| | ||| || Sbjct 2672 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACC 2613 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||| || ||||| || || ||||| || ||||| Sbjct 2612 TCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 142970 CGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAG 143029 |||| || | ||| | || ||||||||||| ||||||||||| | ||| || Sbjct 2552 CGCAGCACAAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCTGCAAGTGTCCTTCCA 2493 Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| |||||||||||||| |||||| | |||||| || ||||| |||||||||||| Sbjct 2492 TCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGGATGCCTTCTTTG 2433 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||||| || | | || | || || | | ||| ||||| | || | Sbjct 2432 TCCTGGATTTTGGCCTTGACATTGTCTATTGTATCTGAGCTTTCAACTTCCAGTGTAATT 2373 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||||||| || | || || || || || ||||| Sbjct 2372 GTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 2338 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || | ||| | ||| | |||| || || || || || || |||||||| Sbjct 3021 GCCACCACGAAGACGAAGAACCAGGTGAAGGGTGGACTCCTTCTGGATATTGTAATCTGC 2962 Query 143017 CATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 || |||| || | ||||| || || || |||||| | || || ||||| ||||| || | Sbjct 2961 CAGAGTGCGTCCA-TCTTCAAGCTGCTTCCCAGCAAAAATGAGGCGTTGTTGATCCGGTG 2903 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||||||| || | | || | || || | | || | Sbjct 2902 GGATCCCTTCCTTGTCTTGAATTTTTGCCTTCACATTATCAATTGTATCTGAGCTCTCAA 2843 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | || | ||| | || || || ||||| ||||| || ||||||||||| Sbjct 2842 CCTCCAAAGTGATTGTTTTCCCAGTCAAAGTTTTGACAAATATTTGCAT 2794 >seq502676 Length=6550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || ||||| | ||||||||| || || ||| |||||| | |||||| || Sbjct 1273 GTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCT 1214 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | ||||| | |||||||| || || |||||||||||||| |||||| ||| Sbjct 1213 GCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTC 1154 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | || ||||| | ||| | || || ||||||| ||| Sbjct 1153 ACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTT 1094 Query 143168 TTTACGAATATTTGCAT 143184 || || || || ||||| Sbjct 1093 TTGACAAAAATCTGCAT 1077 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 |||| |||| || ||||| || || |||||||||||| | || || || || Sbjct 1057 ACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCC 998 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 |||||||| ||||| | |||| || |||||||||||||| || ||||| ||||| | Sbjct 997 AGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGA 938 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||| | | || | ||| || | || || || | ||| | ||| ||| Sbjct 937 ATTTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTG 878 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| | || || || || || ||||| Sbjct 877 CCGGTAAGAGTCTTGACAAAGATCTGCAT 849 >seq5020 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAAT-CGC 143015 ||| || |||| || | |||| ||| | ||| ||||| || || |||||||||| ||| Sbjct 1038 GCCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGC 979 Query 143016 TCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | || || ||| || || || || || ||| |||| || || |||||||| |||| Sbjct 978 T-AAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAG 920 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || ||||| ||||| ||| || || | | || | ||||| | | ||| | Sbjct 919 GGATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGA 860 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| | ||| | || |||||||| | ||||| ||||| || ||||| Sbjct 859 CTTCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || ||||| | || || || ||||| ||||||||||| || || || ||||| Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 | |||||| || ||| |||| || | |||||||| || || || ||||||||||| | Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCCTGA 674 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 ||||| ||||| | || | ||||| | | || ||||| | || || || ||| Sbjct 675 ATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTG 734 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCAT 143184 || || | ||||| ||||| || ||||| Sbjct 735 CCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501980456828160