Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq794097 116 5e-21 >seq794097 Length=14469 Score = 116 bits (128), Expect = 5e-21 Identities = 369/559 (66%), Gaps = 16/559 (3%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 ||||||||||||||||| ||||| ||||||||||| ||||| | ||| || |||||| || Sbjct 12541 ATTTGGGAAATGTACAAGAAGGCCCAGGCCTCCTTCTGGACTGCCGACGAAGTCGATTTG 12482 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 || ||||||| | | | ||||| | | | | | ||| | || || | Sbjct 12481 GCCCAGGACCTCTCCCACTGGGACTCCCTCCTCCCCT---CCGAGAAGCATTTCATCAAG 12425 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGA 125198 ||| | | |||||||| |||| ||||| || |||||| ||| ||||| | || Sbjct 12424 CACGTCCTCGCCTTCTTCGCCGCTTCCGACGGCATCGTCCTCGAGAATCTTGCCGCCCGC 12365 Query 125199 TTCTCTCAAGAGTTGACCAT-TC-CAGAGGTGTCGTGCTTT-TACGGATTCCAAATCATG 125255 ||| | ||| | ||| || | |||| || || || ||||| ||||| || Sbjct 12364 TTCATGAACGAGGT--CCAGGTCTCCGAGGCC-CGCGCCTTCTACGGCTTCCAGATTGCC 12308 Query 125256 ATTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCC- 125314 || |||||| | ||||| || |||||| |||| || | || || ||| | Sbjct 12307 ATCGAGAACATCCACTCCGAGATGTACAGCCTTTTGATCGAGACCTATATCAAGGATTCT 12248 Query 125315 GCAACGTAAACACATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGC 125374 || | | | ||||||||| ||| ||| |||| | || | | | || ||||| Sbjct 12247 GCCGAGAAGGC-CATGCTCTTCCGCGCCATCCACACCATTCCCTGCGTCCAGAACAAGGC 12189 Query 125375 TCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGC 125434 | |||| | || ||||| | | | | || | | |||| | ||| | || Sbjct 12188 CAATTGGGCCCTGCGCTGGATTCAGGGTTCCGAATCCTT---CACCGAGCGTCTGCTCGC 12132 Query 125435 ATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTT-TGCGGCCATCTTTTGGCTCA 125493 |||||| ||| ||||| || ||||| || || || || |||| | || || ||||| | Sbjct 12131 CTTCGCCTGCGTGGAGGGGATATTCTTCTCCGGAAGCTTCTGCG-CAATATTCTGGCTTA 12073 Query 125494 AGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGG 125553 |||||||||| | |||||||| ||||| | ||||| || ||||| || || |||| Sbjct 12072 AGAAGCGCGGGTTGATGCCCGGGTTGACGTTCTCCAACGAATTGATATCGCGGGATGAGG 12013 Query 125554 GCCTACACTGTGACTTTGC 125572 | | ||||| ||||| || Sbjct 12012 GTTTGCACTGCGACTTCGC 11994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733701519626880