Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq500796 122 6e-23 seq502676 113 3e-20 seq553100 107 1e-18 seq621678 104 2e-17 seq731700 95.1 9e-15 seq690132 89.7 4e-13 seq564812 86.0 4e-12 >seq500796 Length=7474 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| |||| || | || | ||| ||||| || |||||||| ||||||||||| Sbjct 2564 CCACCCCTCAGTCGCAGCACAAGATGGAGGGTTGATTCTTTTTGGATGTTGTAATCTGCA 2505 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | |||||| |||||| | ||||| | ||| ||||| || Sbjct 2504 AGTGTCCTTCCATCTTCAAGTTGTTTACCAGCGAAGATCAATCTTTGCTGGTCTGGAGGG 2445 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| |||||| ||| ||| | ||||| ||||| |||| || Sbjct 2444 ATGCCTTCTTTGTCCTGGATTTTGGCCTTGACATTGTCTATTGTATCTGAGCTTTCAACT 2385 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| || || || || ||||| || |||||||| ||||| Sbjct 2384 TCCAGTGTAATTGTCTTGCCAGTAAGAGTCTTCACAAAAATCTGCAT 2338 Score = 102 bits (112), Expect = 6e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTG 15219 ||| ||||| || |||||||| || |||||||| ||| |||| | ||||| | ||| Sbjct 1857 ATGGAGGGTAGATTCTTTTTGAATATTGTAATCTGCAAGAGTTCTACCATCTTCAAGTTG 1798 Query 15220 TTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT 15279 || ||||| | || | | || || || ||||| ||||| || || ||| || Sbjct 1797 CTTTCCAGCAAAAATAAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTATCTTGAATCTT 1738 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| ||| | || ||||||||| | || || || | || ||||||||||| || Sbjct 1737 AGCCTTGACATTGTCGATGGTATCGGAGCTCTCAACCTCCAGAGTGATGGTTTTACCGGT 1678 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 ||||||||||||||||| ||||| Sbjct 1677 AAGAGTTTTTACAAAAATCTGCAT 1654 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || || ||||| | || || | |||||| || || ||||| || |||||||||||| Sbjct 2792 CCTCCCCTCAAACGCAATACCAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCGGCA 2733 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || | || | ||||| | || || ||||| | |||||||| ||||| || || Sbjct 2732 AGTGTCCTACCATCTTCAAGCTGCTTCCCAGCAAAGATCAAACGCTGTTGATCAGGAGGG 2673 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || || || || ||| ||| ||| ||| | || || || || | |||| || Sbjct 2672 ATGCCCTCCTTATCCTGAATCTTGGCCTTAACATTGTCAATTGTGTCTGAACTTTCAACC 2613 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||||||| || || ||||||| ||| || || || || ||||| Sbjct 2612 TCCAAGGTAATCGTCTTTCCTGTCAAAGTCTTCACGAAGATCTGCAT 2566 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || || || || |||||||| ||| | | | ||||| | || Sbjct 2996 TGAAGGGTGGACTCCTTCTGGATATTGTAATCTGCCAGAGTGCGTCCATCTTCAAGCTGC 2937 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | || | |||||||| || ||| || ||||| ||||| |||||| Sbjct 2936 TTCCCAGCAAAAATGAGGCGTTGTTGATCCGGTGGGATCCCTTCCTTGTCTTGAATTTTT 2877 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | || || || || || || ||||| || ||| Sbjct 2876 GCCTTCACATTATCAATTGTATCTGAGCTCTCAACCTCCAAAGTGATTGTTTTCCCAGTC 2817 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | |||||| ||||| |||||||| Sbjct 2816 AAAGTTTTGACAAATATTTGCAT 2794 >seq502676 Length=6550 Score = 113 bits (124), Expect = 3e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 || || || ||||| | ||||||||| ||| | ||| ||||||| ||||||||||| Sbjct 1273 GTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCT 1214 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 || |||||| | || || || |||||| ||||||||||| ||||||| || Sbjct 1213 GCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTC 1154 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || || ||| | || || || | ||||| |||||||| ||||| ||| Sbjct 1153 ACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTT 1094 Query 15347 TTTACAAAAATTTGCAT 15363 || |||||||| ||||| Sbjct 1093 TTGACAAAAATCTGCAT 1077 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||| ||||| || || || || || |||||||||||| ||| |||| | || || Sbjct 1057 ACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCTAGGGTTCTACCATCCTCC 998 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | ||||| || || || ||| ||||| ||||| ||||| | Sbjct 997 AGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGAATACCTTCCTTGTCTTGA 938 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| || ||| | || || ||||| | | || || || | || || ||||| Sbjct 937 ATTTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAACCTCCAGAGTGATCGTTTTG 878 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| || ||||| Sbjct 877 CCGGTAAGAGTCTTGACAAAGATCTGCAT 849 >seq553100 Length=2664 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 || |||||||| || ||||| ||||| || ||||||||||| || | |||||||| Sbjct 881 CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAATCTGCC 822 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 ||| | ||| | | ||| | || || || || |||||| || || || | ||| ||| Sbjct 821 AGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGTTAGGA 762 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||| ||||| ||| ||| ||| || | || | | || | | || || Sbjct 761 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGACTGCGTCTGAACTGTCCACC 702 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| |||||||||||| || |||| ||||| || || || ||||| Sbjct 701 TCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCAT 655 >seq621678 Length=9740 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 15167 GTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGTTTGCCA 15226 ||||| || || || || ||||||||| ||| |||| | || || |||||||||||| Sbjct 795 GTGGATTCCTTCTGGATATTGTAATCGGCTAGGGTTCTGCCATCCTCCAATTGTTTGCCA 854 Query 15227 GCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTGCTCTTT 15286 ||| | ||||| | ||||| ||| |||||| ||||| ||||| || ||| ||| Sbjct 855 GCGAAAATCAATCTCTGTTGATCGGGTGGAATACCTTCCTTGTCCTGGATCTTGGCCTTA 914 Query 15287 ACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTCAGAGTT 15346 || | || || ||||| | | || || || | ||||| || || || || || ||| Sbjct 915 ACGTTATCAATCGTATCAGAACTCTCAACCTCGAGAGTAATCGTCTTCCCCGTTAGGGTT 974 Query 15347 TTTACAAAAATTTGCAT 15363 || ||||| || ||||| Sbjct 975 TTGACAAAGATCTGCAT 991 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || |||| || ||||| | ||||| || ||||| ||||||||||| Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | || | ||||| ||||||||||| || | || | | || || || |||| Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||||||||| ||||||| ||||| | || || || ||| | || || Sbjct 657 ATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACT 716 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | |||| ||||| || || || ||||| || ||||| ||||| Sbjct 717 TCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| || ||||| || ||||| | ||||||||| || ||| | || || Sbjct 326 AACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTC 385 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || ||||| || |||||| | ||||| || ||| || || |||||||| Sbjct 386 GAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTG 445 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 ||| |||||| || ||| | || || || || | || || || | |||||||||| Sbjct 446 AATCTTTGCT-TTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGGTTT 504 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || |||| ||||| ||||| || |||||| Sbjct 505 TTCCAGTCAATGTTTTCACAAATATCTGCATA 536 >seq731700 Length=3081 Score = 95.1 bits (104), Expect = 9e-15 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| ||||| |||||||| || ||||| ||||||||||| || | | | || || Sbjct 1584 AACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGGCCATCCTC 1525 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||| |||||| | |||| | |||||||| ||| ||||| || ||||| Sbjct 1524 GAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCCTTGTCCTG 1465 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||| || || | || || ||||| |||| || || | ||||||||| || Sbjct 1464 GATCTTGGCTTTAACGTTGTCAATTGTATCTGAGCTTTCCACCTCAAGGGTAATGGTCTT 1405 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 ||||| || ||||| ||||| || ||||| Sbjct 1404 CCCTGTGAGGGTTTTGACAAAGATCTGCAT 1375 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCT 15195 ||||| | || || | || || || |||||||| || || || |||||||| || || Sbjct 2057 CCACCACGCAGCCTAAGGACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGCC 1998 Query 15196 TAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGG 15255 || | | | || || | || || ||||| | |||| | || ||||| ||| Sbjct 1997 AAGG-TGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATCAGCCTCTGCTGGTCCGGTGG 1939 Query 15256 AATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTAC 15315 ||| ||||| ||||| || ||| ||| ||| | || ||||| || | | || || Sbjct 1938 AATACCTTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAACTCTCCAC 1879 Query 15316 ATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || | ||||||||| || |||||||| || || ||||||||||||||| Sbjct 1878 TTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACAAAAATTTGCATA 1830 >seq690132 Length=1697 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | || |||| || ||||| | ||||| || ||||| ||| ||||||| Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | || | | |||| ||||||||||| || | || | | || || | |||| Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || ||||||||||| ||||||| |||||| | || || || ||| | || || Sbjct 941 ATCCCTTCTTTGTCCTGAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACT 882 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||||| ||||| || | |||||||| || ||||| ||||| Sbjct 881 TCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq564812 Length=421 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 15149 CTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAAT-CGCTTAGAATTCTCGC 15207 |||| || ||||| | ||||| || ||||| ||||||||| ||| | | | || | Sbjct 253 CTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAA-AGTCCTTCC 195 Query 15208 GTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTT 15267 |||| |||| |||||| || | || | | || || || |||||| |||||||| Sbjct 194 AACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTT 135 Query 15268 GTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAAT 15327 ||| ||||||| |||||| | || || || ||| | || || || | ||||| Sbjct 134 GTCCTCAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAAT 75 Query 15328 GGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 |||| || || |||||||| || ||||| ||||| Sbjct 74 TGTTTGGCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 358673165905008