Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq621678 116 3e-21 seq690132 113 4e-20 seq502676 104 2e-17 seq564810 102 7e-17 seq564812 95.1 1e-14 seq5020 93.3 3e-14 seq564809 86.0 5e-12 seq731700 84.2 2e-11 >seq621678 Length=9740 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||||| |||| ||||| || |||||||||||||| |||||||||||| Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | || |||| ||||| || ||| | ||||| |||||||||||| || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| |||||| | | | || ||| ||| | Sbjct 657 ATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACT 716 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | |||| ||||| || |||| |||||||| ||||| ||||| Sbjct 717 TCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| || ||||||||||||| |||||||| || | ||| | ||||| Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| || |||||| | || || ||||| ||||| || | |||||||||||| | Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTGA 446 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 || || ||| || | | | ||| || |||| || | ||||||||||| Sbjct 447 ATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGGTTTTT 506 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || ||||| ||||| || ||||| Sbjct 507 CCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq690132 Length=1697 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||||| |||| ||||| || |||||||||||||| ||||||||||| Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||||| | | |||| ||||| || ||| | || || |||||||||| | || Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | || |||||||| |||||| |||||| | | | || ||| ||| | Sbjct 941 ATCCCTTCTTTGTCCTGAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACT 882 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| ||||| || ||| ||||||||| ||||| ||||| Sbjct 881 TCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq502676 Length=6550 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | || | ||||| || ||||||||||||| |||||||| ||| Sbjct 1303 CCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCC 1244 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | |||| |||| ||||| || ||| | || || ||||||||||| || Sbjct 1243 AGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGA 1184 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||| |||||||| |||||| ||| || | | | || ||| ||| | Sbjct 1183 ATGCCTTCTTTGTCTTGAATTTTGGCTTTCACGTTATCAATTGTGTCGGAGCTCTCAACT 1124 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||||| |||||||| || | |||||||||||||| ||||| Sbjct 1123 TCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq564810 Length=1937 Score = 102 bits (112), Expect = 7e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 18826 CCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGC 18885 ||||| |||| ||||| || |||||||||||||| |||||| |||||| || | | Sbjct 703 CCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCC 644 Query 18886 GTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTT 18945 | |||| | ||| || ||| | || || |||||||||||| || | || ||||| Sbjct 643 AACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTT 584 Query 18946 GTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAAT 19005 ||| ||||||| |||||| | | | || ||| ||| ||| | ||||| Sbjct 583 GTCCTCAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCACCTTCCAGCGTAAT 524 Query 19006 GGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| || |||| ||||||||| ||||| ||||| Sbjct 523 TGTTTGGCCAGTTAGAGTTTTGACGAAAATCTGCAT 488 >seq564812 Length=421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 18822 GCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTT 18881 ||| ||||| |||| ||||| || |||||||||||||| |||||| ||||| || Sbjct 258 GCATCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCC 199 Query 18882 TGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCT 18941 | | | |||| | ||| || ||| | || || |||||||||||| || | || | Sbjct 198 TTCCAACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTT 139 Query 18942 CTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGG 19001 ||||||| ||||||| |||||| | | | || ||| ||| ||| | | Sbjct 138 CTTTGTCCTCAATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCG 79 Query 19002 TAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 |||| |||| || || | ||||||||| ||||| ||||| Sbjct 78 TAATTGTTTGGCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq5020 Length=1186 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 |||| || || ||||| ||||| ||||||||||| | || || ||||||||||||| Sbjct 1013 TGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCTAAAGTCCTGCCGTCCTCCAGCTGC 954 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| | || || | |||||||||| || | || || ||||| ||| || Sbjct 953 TTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCTGAATCTTG 894 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTTACCTGT 19017 || || | | ||| || ||| || | || ||||| || |||||||| || || Sbjct 893 GCCTTGACATTGTCGATGGTGTCG-GAGCTTTCGACTTCGAGAGTGATGGTTTTGCCGGT 835 Query 19018 TAAAGTTTTGACAAAAATTTGCATT 19042 || |||||||| || || |||||| Sbjct 834 TAGGGTTTTGACGAAGATCTGCATT 810 >seq564809 Length=1567 Score = 86.0 bits (94), Expect = 5e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 ||||| ||| ||||| |||| ||||| || |||||||||||||| |||||| |||| Sbjct 176 CCTCCGGGCATCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCC 117 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | || | | | |||| | ||| || ||| | || || |||||||||||| || Sbjct 116 AAAGTCCTTCCAACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGA 57 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTAC 18966 | || |||||||| ||||||| |||||| Sbjct 56 ATCCCTTCTTTGTCCTCAATTTTGGCTTTTAC 25 >seq731700 Length=3081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || |||| ||| | ||||| ||| | || || ||||| || || ||||| |||||| Sbjct 1829 CCACCACGCAGCCTAAGCACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCCGCC 1770 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| ||||| ||||| ||| | || || |||||||| ||| || Sbjct 1769 AATGTGCGGCCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCTCTGCTGGTCCGGTGGG 1710 Query 18935 ACGCCCTCTTTGTC 18948 | ||||||||||| Sbjct 1709 ATCCCCTCTTTGTC 1696 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || |||||||| || |||||||||||||| | || || | ||||| ||||| || || Sbjct 2483 GTGGACTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGCCATCCTCTAGCTGCTTCCCA 2424 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 ||| ||||||| ||||||||||| || | ||||| ||||| |||||| Sbjct 2423 GCAAAAATAAGCCTCTGCTGATCAGGAGGGATACCCTCCTTGTCTTGAATTTT 2371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410559575685472