Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq621678 93.3 3e-14 seq690132 84.2 1e-11 seq564812 84.2 1e-11 seq502676 84.2 1e-11 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| || |||||||| | |||| | | || ||| Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || ||| || | | ||||| |||| || || |||||||| || | Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCCTGA 674 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| | | ||| |||||| | | ||| ||||| || | ||||| Sbjct 675 ATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAACTGTTTTG 734 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || || || ||||| |||||||| ||||| Sbjct 735 CCAGTTAGGGTTTTGACGAAAATCTGCAT 763 >seq690132 Length=1697 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| || ||||||| | |||| | || | ||| Sbjct 1043 ACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCCAAAGTTTTTTCAACTTCC 984 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 ||||| || || | | || | | ||||| | || || || |||||||| || | Sbjct 983 AATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGAATCCCTTCTTTGTCCTGA 924 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| | | ||| |||||| | | ||| ||||| || || ||||| Sbjct 923 ATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTTG 864 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || | |||||||| |||||||| ||||| Sbjct 863 CCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq564812 Length=421 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 33161 ACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCC 33220 ||||||||||| || ||||| ||||| || |||||| | |||| | | | ||| Sbjct 247 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCCTTCCAACTTCC 188 Query 33221 AATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTA 33280 |||| || || ||| || | | ||||| |||| || || |||||||| || | Sbjct 187 AATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCCTCA 128 Query 33281 ATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTT 33340 || |||||| | | ||| |||||| | | ||| ||||| || || |||| Sbjct 127 ATTTTGGCTTTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTAATTGTTTGG 68 Query 33341 CCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 || ||||||||||| |||||||| ||||| Sbjct 67 CCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq502676 Length=6550 Score = 84.2 bits (92), Expect = 1e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 33166 ATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTG 33225 |||||| |||||||| ||||| | |||||||| | || | | ||| |||||||| Sbjct 1280 ATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTG 1221 Query 33226 CTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGC 33285 || || |||||| | | ||||| || | || ||||||||||| || ||| Sbjct 1220 TTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTT 1161 Query 33286 CTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGT 33345 ||| || | | ||| |||||| | | ||| |||||||| || ||||| || || Sbjct 1160 GGCTTTCACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGT 1101 Query 33346 AAGAGTTTTTACGAAAATTTGCAT 33369 || ||||| || ||||| ||||| Sbjct 1100 CAGGGTTTTGACAAAAATCTGCAT 1077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 315691710102624