Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq500796 98.7 7e-16 seq502676 91.5 1e-13 seq621678 87.8 1e-12 >seq500796 Length=7474 Score = 98.7 bits (108), Expect = 7e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || ||||| ||||| ||||| | ||| |||| || | ||| || || ||||| Sbjct 2300 TCCTTTTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCAAGTTGCTTCCCAGCAAAG 2241 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 |||| | |||||||| |||| | |||||| ||||| || ||| |||||| | Sbjct 2240 ATCAGTCTCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTTGCTTTGACATTG 2181 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| ||||||| ||| || |||| ||||||||||| || || | |||||||||| Sbjct 2180 TCAATGGTATCTGAGCTCTCAACCTCGAGAGTAATTGTTTTTCCAGTAAGAGTCTTCACA 2121 Query 44111 AATATTTGCATG 44122 || ||||||||| Sbjct 2120 AAAATTTGCATG 2109 Score = 91.5 bits (100), Expect = 1e-13 Identities = 138/194 (71%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 43930 CTCTTTTTGAATATTATAATCGTTTAATTGAC-GCTCATCGTCCAATTGTTTTCCTGCAA 43988 |||||| || ||||| ||||| | || | | | |||| || | ||| ||||| |||| Sbjct 2073 CTCTTTCTGGATATTGTAATC-TGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAA 2015 Query 43989 ATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCA 44048 | || | || ||||| || |||| | ||||| |||||| ||| ||| |||| Sbjct 2014 AGATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTTGCCTTGAGAT 1955 Query 44049 TAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCA 44108 || | | ||||| | | || || |||| ||| || |||||||| || | |||||||| Sbjct 1954 TATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTATGGTTTTACCAGTAAGAGTCTTCA 1895 Query 44109 CAAATATTTGCATG 44122 |||| ||||||||| Sbjct 1894 CAAAGATTTGCATG 1881 >seq502676 Length=6550 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 43967 TCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTA 44026 || ||||||||||| ||||||||||||| || ||||| || | || | |||||||| Sbjct 1231 TCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTG 1172 Query 44027 TCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATT 44086 ||| |||||| ||| || || ||| || || | ||| || || | |||||| Sbjct 1171 TCTTGAATTTTGGCTTTCACGTTATCAATTGTGTCGGAGCTCTCAACTTCCAGAGTAATT 1112 Query 44087 GTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||||||||| | || || ||||| || ||||| Sbjct 1111 GTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq621678 Length=9740 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| || | || |||| |||||||| | ||| ||| |||||||| || ||||| Sbjct 536 ACCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGC 595 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| ||||||||||| |||||||| || | || ||||| ||| | || Sbjct 596 CAAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGG 655 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||||| || |||||| ||| || || ||| || || | ||| || Sbjct 656 AATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTCTCAAC 715 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| |||||| || |||| || || || || || ||||| Sbjct 716 TTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 351343216242624