Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq621678 111 1e-19 seq502676 111 1e-19 seq690132 102 7e-17 seq564810 96.9 3e-15 seq564812 93.3 4e-14 seq500796 93.3 4e-14 seq553100 82.4 6e-11 >seq621678 Length=9740 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||| | |||||||| | || || || ||||| ||||||||||| || Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | |||||||||||||||||| ||| | ||||||||||| ||||| || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||||||||| |||||| ||| || | ||| | ||| || | || Sbjct 657 ATTCCTTCTTTGTCCTGAATTTTGGCTTTTACGTTATCAATTGTGTCG-GAGCTCTCAAC 715 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| |||| |||||||| || | |||||||| ||||| ||||| Sbjct 716 TTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| || || || || ||||| | ||||||||| | | ||| ||| || Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 | || ||||||||| | || |||||||||||||| || | ||| |||||||| | Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCCTGA 446 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 || ||| ||| || | ||| || || || | ||| |||| ||||||||||| Sbjct 447 ATCTTTGCTTTGACATTATCAATAGTGTC-AGAGCTCTCCACCTCCAGAGTAATGGTTTT 505 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| ||||| ||||| || ||||| Sbjct 506 TCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq502676 Length=6550 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 20012 GTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTGTTTGCCC 20071 || || || ||||| | ||||||||| ||| ||| | ||||||||||||||||| Sbjct 1273 GTCGACTCCTTTTGAACGTTGTAATCTGCCAGAGTCCTCCCGTCTTCCAATTGTTTGCCT 1214 Query 20072 GCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTTTTGTTTC 20131 ||| | || |||||||| ||||| || | |||||||||||| |||||| |||| Sbjct 1213 GCAAATATCAGCCTCTGCTGATCTGGTGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTC 1154 Query 20132 ACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGGTCAACGT 20190 || | ||| | ||| || | || ||||| ||||| ||||| ||||||| || Sbjct 1153 ACGTTATCAATTGTGTCG-GAGCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGT 1095 Query 20191 TTTGACAAAAATTTGCAT 20208 |||||||||||| ||||| Sbjct 1094 TTTGACAAAAATCTGCAT 1077 >seq690132 Length=1697 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || || || | ||| | |||||||| | || || || ||||| ||| ||||||| || Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | |||||| | |||||||||||||||| ||| | || |||||||| |||| || Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGT 20160 | ||||||||||| |||||| ||| || | ||| | ||| || | || Sbjct 941 ATCCCTTCTTTGTCCTGAATTTTGGCTTTTACATTATCAATTGTGTCG-GAGCTCTCAAC 883 Query 20161 TTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| ||||| |||||||| | | |||||||| ||||| ||||| Sbjct 882 TTCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq564810 Length=1937 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || ||||| ||||||||| | ||| ||| | | ||||| Sbjct 696 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCCAACTTCC 637 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||| |||||| ||| | || |||||||| ||||| || | ||||||||||| || Sbjct 636 AATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCCTCA 577 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | ||| | ||| || | || ||||| ||||| |||| Sbjct 576 ATTTTGGCTTTTACGTTATCAATTGTGTCG-GAGCTCTCACCTTCCAGCGTAATTGTTTG 518 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | |||||||| ||||| ||||| Sbjct 517 GCCAGTTAGAGTTTTGACGAAAATCTGCAT 488 >seq564812 Length=421 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 |||||||| | || || || ||||| ||||||||| ||| ||| | | ||||| Sbjct 247 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCCTTCCAACTTCC 188 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 |||| |||||| ||| | || |||||||| ||||| || | ||||||||||| || Sbjct 187 AATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTTGTCCTCA 128 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTT 20178 ||||| ||| || | ||| | ||| || | || ||||| ||||| |||| Sbjct 127 ATTTTGGCTTTTACATTATCAATTGTGTCG-GAGCTCTCAACTTCCAGCGTAATTGTTTG 69 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | |||||||| ||||| ||||| Sbjct 68 GCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq500796 Length=7474 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 20005 ATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCCAATTG 20064 ||| || |||||||||||||| || |||||||| | | |||| || |||||| | ||| Sbjct 1857 ATGGAGGGTAGATTCTTTTTGAATATTGTAATCTGCAAGAGTTCTACCATCTTCAAGTTG 1798 Query 20065 TTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCAATTTT 20124 || || ||| ||||||||||||| ||||| || | ||||| || || ||| || Sbjct 1797 CTTTCCAGCAAAAATAAGCCTCTGCTGATCTGGAGGAATCCCTTCCTTATCTTGAATCTT 1738 Query 20125 TTGTTTCACCTGGCCAACAGAATCGCCAGGT-TCCGTTTCCACGGTAATGGTTTTGCCGG 20183 || || | | | | | |||| || | || |||| || |||||||| |||| Sbjct 1737 AGCCTTGACATTGTCGATGGTATCG-GAGCTCTCAACCTCCAGAGTGATGGTTTTACCGG 1679 Query 20184 TCAACGTTTTGACAAAAATTTGCAT 20208 | | ||||| |||||||| ||||| Sbjct 1678 TAAGAGTTTTTACAAAAATCTGCAT 1654 >seq553100 Length=2664 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 || |||| |||||||| ||||||||||| || || ||||| || | |||||||| || Sbjct 881 CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAATCTGCC 822 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | || ||| | || || || ||| | || || | ||| || | | || Sbjct 821 AGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGTTAGGA 762 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||| ||||| ||| || || || | | | || | || | ||| Sbjct 761 ATGCCTTCCTTGTCCTGAATCTTGGCCTTGACGTTGTCGACTGCGTCTGAACTGTCCACC 702 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || | |||||||||||| || ||||| |||||||| || || |||||| Sbjct 701 TCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCATT 654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415525434362928