Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq5020 109 5e-19 seq502676 96.9 3e-15 seq361176 89.7 4e-13 seq621678 87.8 1e-12 >seq5020 Length=1186 Score = 109 bits (120), Expect = 5e-19 Identities = 155/212 (73%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 48518 ACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT--CGTCCT 48575 |||| ||| ||||| ||||| |||||||||||||| || || ||| || |||||| Sbjct 1019 ACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCTAAA-GTC-CTGCCGTCCT 962 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 |||||||||| ||| | | || | |||||||||||| || | | |||||||||| Sbjct 961 CCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGGATCCCTTCCTTGTCCT 902 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTT 48694 ||| || ||||| | | ||||| |||| || | || | |||| || |||||| Sbjct 901 GAATCTTGGCCTTGACATTGTCGATGGTGTCGG-AGCTTTCGACTTCGAGAGTGATGGTT 843 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 || ||||| || ||||| || || |||||||| Sbjct 842 TTGCCGGTTAGGGTTTTGACGAAGATCTGCAT 811 >seq502676 Length=6550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 || ||||| | ||| | |||| ||||| || ||||| |||||||||||||| || Sbjct 1075 CCGCCGCGGAGCCTGAGGACTAGGTGAAGAGTCGATTCCTTCTGAATGTTGTAATCGGCT 1016 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || | |||||||| || || || || |||| || ||||||||||| || Sbjct 1015 AGGGTTCTACCATCCTCCAGTTGTTTCCCAGCGAAAATCAACCGCTGCTGATCGGGAGGA 956 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTC 48679 | || ||||||||| |||||| |||| | | || ||||| | | ||| | Sbjct 955 ATACCTTCCTTGTCTTGAATTTTGGCTTTGACATTGTCGATCGTATCAGAACTCTCAACC 896 Query 48680 TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 || | || || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 895 TCCAGAGTGATCGTTTTGCCGGTAAGAGTCTTGACAAAGATCTGCATC 848 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || || || ||||| || | || | ||||| |||||| Sbjct 595 TGGAGCGTGGACTCCTTCTGTATATTATAATCGGCGAGGGTCCGGCCATCCTCGAGCTGC 536 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||||||| || | || |||||| ||| || || Sbjct 535 TTGCCGGCGAAGATGAGACGCTGCTGATCGGGGGGAATACCTTCCTTATCCTGGATCTTG 476 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGG 48701 ||||| | |||||||||||| || ||| || | |||| || ||||| || |||| Sbjct 475 GCCTTGACATTATCTATGGTATCGG-AG-CTCTCGACTTCGAGAGTAATGGTCTTGCCGG 418 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 | || ||||| || || ||||||||| Sbjct 417 TTAGGGTTTTGACGAAGATCTGCATC 392 >seq361176 Length=4428 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/195 (71%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| || |||||||| || || | || | ||||| |||||||| ||| | | Sbjct 4223 CTCCTTCTGGATGTTGTAGTCGGCGAGCGTGCGGCCATCCTCGAGCTGCTTTCCGGCAAA 4164 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--TA 48652 ||| | ||||||||||||| || | | |||||||||| || || ||||| | Sbjct 4163 AATCAGACGCTGCTGATCCGGAGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTT 4104 Query 48653 GACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTC 48712 | || |||||||||| || || ||| | || || || ||||| ||||| ||||| Sbjct 4103 GTCG--ATGGTATCGGAGGATTCAACCTCCAGGGTAATCGTCTTACCCGTGAGGGTTTTG 4046 Query 48713 ACAAAAATCTGCATC 48727 || || ||||||||| Sbjct 4045 ACGAAGATCTGCATC 4031 >seq621678 Length=9740 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || || || ||||| || | || ||||||| |||||| Sbjct 1017 TGGAGCGTGGACTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGC 1076 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || || | | || | |||||||||||| || | || ||||||||| || || Sbjct 1077 TTTCCAGCAAAGATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTG 1136 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTC-CGTCT-CGACTGTTATGGTTTTACCGG 48701 ||||| | || ||||||| || ||| || || ||| ||||||||||| |||| Sbjct 1137 GCCTTGACGTTATCAATTGTATCGG-AG-CTCTCGACTTCGAGAGTTATGGTTTTGCCGG 1194 Query 48702 TGAGAGTTTTCACAAAAATCTGCATC 48727 |||| |||||||| || ||||||||| Sbjct 1195 TGAGGGTTTTCACGAAGATCTGCATC 1220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 417173326202288