Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq353965 111 8e-20 seq632341 109 3e-19 seq369430 109 3e-19 seq248233 109 3e-19 seq130398 109 3e-19 seq1334 109 3e-19 seq644859 107 1e-18 seq548035 107 1e-18 seq436537 107 1e-18 seq150800 107 1e-18 seq45956 107 1e-18 seq432232 105 3e-18 seq415226 105 3e-18 seq713035 104 1e-17 seq631697 104 1e-17 seq607900 104 1e-17 seq377961 104 1e-17 seq336813 104 1e-17 seq248295 102 4e-17 >seq353965 Length=1131 Score = 111 bits (122), Expect = 8e-20 Identities = 72/80 (90%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 11450 TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTR 11509 ||||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| Sbjct 655 TCAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTA 596 Query 11510 ACCAACTGAGCTAATGGGCC 11529 ||||||||||||||| |||| Sbjct 595 ACCAACTGAGCTAATAGGCC 576 >seq632341 Length=725 Score = 109 bits (120), Expect = 3e-19 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGC 11498 ||| ||||| ||| |||||||||| | | |||||||| ||||||||||||||||||| Sbjct 553 AATTAAAAACGAAAGTTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGC 612 Query 11499 ACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||| ||||||||||||||| |||| Sbjct 613 ACGACGCTCTAACCAACTGAGCTAATAGGCC 643 >seq369430 Length=1985 Score = 109 bits (120), Expect = 3e-19 Identities = 77/89 (87%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||| | ||| ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 1496 AAAAAAAGAAAAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 1437 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 1436 GACGCTCTAACCAACTGAGCTAATAGGCC 1408 >seq248233 Length=386 Score = 109 bits (120), Expect = 3e-19 Identities = 85/102 (83%), Gaps = 4/102 (4%) Strand=Plus/Minus Query 11432 TATAGAATTAATAAAAAATC----AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 |||| | | ||||||||| ||| ||||||||| | | |||||||| |||||||| Sbjct 317 TATAAAGTGAATAAAAAAATGGGTAAAGTGGCCCATGCAGGTCTCGAACCTGCGACCTTC 258 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 257 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 216 >seq130398 Length=525 Score = 109 bits (120), Expect = 3e-19 Identities = 84/99 (85%), Gaps = 5/99 (5%) Strand=Plus/Plus Query 11433 ATAGAATTAAT--AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 ||| |||||| |||||| || ||||||||| | | |||||||| ||||||||||| Sbjct 363 ATAAAATTAAATCAAAAAAGCA---TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCG 419 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||| ||||||||||||||| |||| Sbjct 420 TTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 458 >seq1334 Length=2363 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11445 AAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||||| | || ||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 1859 AAAAATAATATATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 1800 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 1799 GCTCTAACCAACTGAGCTAATAGGCC 1774 >seq644859 Length=759 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 79 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 20 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 19 CAACTGAGCTAATAGGCC 2 >seq548035 Length=10346 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||||||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 4774 AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 4833 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 4834 CAGCTGAGCTAATAGGCC 4851 >seq436537 Length=603 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 || |||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 550 AACTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 491 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 490 CAACTGAGCTAATAGGCC 473 >seq150800 Length=561 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 7 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 66 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 67 CAACTGAGCTAATAGGCC 84 >seq45956 Length=759 Score = 107 bits (118), Expect = 1e-18 Identities = 79/90 (88%), Gaps = 2/90 (2%) Strand=Plus/Plus Query 11441 AATAAAAA-ATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 |||||||| || ||| |||||||| | | |||||||| |||||||||||||||||||| Sbjct 479 AATAAAAAGATTTAAT-GGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCA 537 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||| ||||||||||||||| |||| Sbjct 538 CGACGCTCTAACCAACTGAGCTAATAGGCC 567 >seq432232 Length=10477 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 2349 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 2408 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 2409 CTGAGCTAATAGGCC 2423 >seq415226 Length=3476 Score = 105 bits (116), Expect = 3e-18 Identities = 74/84 (88%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 |||| ||| ||||||||| | | |||||||| |||||||||||||||||||||||||| Sbjct 1607 AAAAACAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGC 1550 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 1549 TCTAACCAACTGAGCTAATAGGCC 1526 >seq713035 Length=1023 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 276 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 335 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 336 TGAGCTAATAGGCC 349 >seq631697 Length=1573 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 293 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 234 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 233 TGAGCTAATAGGCC 220 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||| ||||| ||| |||||||| |||||||||||||||||| |||||||||| ||||| Sbjct 712 TGGACCATGCAAGTCTCGAACCTGCGACCTTCGCGTTATTAGGACGACGCTCTAGCCAAC 771 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 772 TGAGCTAATAGGCC 785 >seq607900 Length=6281 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 94 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 35 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 34 TGAGCTAATAGGCC 21 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 295 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 354 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 355 TGAGCTAATAGGCC 368 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||| | ||||||||||||||||||||||| ||||| |||||| Sbjct 734 TGGCCCATGCAGGTCTCGAACTTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAAC 793 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 794 TGAGCTAATAGGCC 807 >seq377961 Length=1277 Score = 104 bits (114), Expect = 1e-17 Identities = 85/103 (83%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11428 GAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| || || |||| ||| ||| ||||| ||| | | |||||||| ||||||| Sbjct 913 GAAATTTATAAATAATTTTAAA--AAAATGGCCGATGCAGGTCTCGAACCTGCGACCTTG 970 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 ||||||||||||||||||||| ||||||||||||||| ||||| Sbjct 971 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCCG 1013 >seq336813 Length=2520 Score = 104 bits (114), Expect = 1e-17 Identities = 78/92 (85%), Gaps = 4/92 (4%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAAT----TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAG 11497 || |||||||||| ||||||||| | | |||||||| |||||||||||||||| | Sbjct 132 ATCAAAAATCAAAAGAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTGG 73 Query 11498 CACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||| ||||||||||||||| |||| Sbjct 72 CACGACGCTCTAACCAACTGAGCTAATAGGCC 41 >seq248295 Length=386 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 300 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 359 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||| ||| |||| Sbjct 360 CAACTGAGCAAATAGGCC 377 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 258959864509888