Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq784841 524 2e-144 seq585748 444 2e-120 seq492030 300 4e-77 seq585752 298 2e-76 seq567144 127 6e-25 seq126251 95.1 3e-15 seq9763 80.6 8e-11 >seq784841 Length=3474 Score = 524 bits (580), Expect = 2e-144 Identities = 711/986 (72%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || ||| | ||| | || || ||||| ||||| ||||| | || ||| |||| || | Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTG 2939 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| ||| |||| | | || ||| || ||||| | ||||| || | || || Sbjct 2938 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCCT 2879 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || ||||| ||||| || ||||| || ||||| || || || | || |||||| || Sbjct 2878 CCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGAT 2819 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 ||||| || || || | |||| | || || || || |||| ||||| || ||| Sbjct 2818 ATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAATC 2759 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | | |||||||||||||||||| | ||||| ||| |||| |||| Sbjct 2758 TGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGTT 2699 Query 19590 TTCCACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGA 19649 | ||||||||| | || ||||| ||| ||| | |||||||| | || | | Sbjct 2698 CTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCGT 2639 Query 19650 TTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCT 19709 | || ||| |||| ||||| | |||||| | | || | |||| ||| | ||| Sbjct 2638 CTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGCT 2579 Query 19710 GTGTTTCTCGTT-TACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| | | |||||| |||| ||||| |||||| ||||||||||||||| || || Sbjct 2578 GT-TTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 2520 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||||| ||||||||| | ||||||||||| || ||||| ||||||||||| || Sbjct 2519 TTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 2460 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 || |||||| | || || ||||| |||||||| || || || ||| ||||||||| || Sbjct 2459 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGG 2400 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 ||| | ||||| | |||| |||||| || || ||| ||| || | || Sbjct 2399 TTCCTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGG 2340 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || || || || ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 2339 TTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGG 2280 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 || ||||||| |||||| || ||| || || |||||||| ||||| ||||| | || Sbjct 2279 CCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 2220 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 | ||| || || || || || ||| | || | | || || |||||||||||||||| Sbjct 2219 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 2160 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAATCCCAA 20187 | | || ||||| || || |||| || ||||||||| ||||| || |||| | Sbjct 2159 CTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAA-GGCCGTGTAATTAATA 2101 Query 20188 CATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATG 20247 | ||||||||| | | ||| | |||||||| || | ||||||||||| || || |||| Sbjct 2100 CTTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATG 2041 Query 20248 CTCATAACTTCCCACTTGATTTAGCT 20273 ||||||||||||| || ||||||||| Sbjct 2040 CTCATAACTTCCCTCTGGATTTAGCT 2015 >seq585748 Length=906 Score = 444 bits (492), Expect = 2e-120 Identities = 604/840 (72%), Gaps = 2/840 (0%) Strand=Plus/Minus Query 19305 ACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTTATGATTCCTTGCTTA 19364 || || ||||| ||||| ||||| | || |||||||| || | ||||| ||| |||| Sbjct 840 ACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTA 781 Query 19365 CTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCGCCTGTAGATATAGAT 19424 | | || ||| | ||||| | || || || | || || || || ||||| ||| Sbjct 780 TTGACCGCAACTTTTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGAT 721 Query 19425 GGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATTATTTCTGGAGCA 19484 || || ||||| || ||||| || || || | ||||||||||||||||| || || || Sbjct 720 GGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCC 661 Query 19485 GTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGGGAAGCCGGCACT 19544 | |||| | || ||||| | |||| ||||| || ||||||||||| | | Sbjct 660 ATTATTCCTACTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCC 601 Query 19545 TTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTCCACTTCTTAATA 19604 | |||||||||||||||||||| ||||| ||| |||| |||| | ||| ||||| | Sbjct 600 GTTGATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTT 541 Query 19605 GGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTAGGAATGAGACCA 19664 || ||||| ||| ||| | |||||||||| || | | | || ||| |||| Sbjct 540 GGTGTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCT 481 Query 19665 TGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGCTGTGTTTCTCGTT-TA 19723 ||||| || |||||| |||| || | |||| | | |||||| ||||| | | || Sbjct 480 TGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGTTACTGCTGT-TTTCTTGATCTA 422 Query 19724 CCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 19783 |||| | || ||||| |||||| ||||||||||||||| || || ||||||||||| || Sbjct 421 CCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 362 Query 19784 CTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 19843 ||||||| | |||||||| || || ||||| ||||||||||| || || |||||| | || Sbjct 361 CTTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 302 Query 19844 TGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 || ||||| |||||||| || || || ||| | ||||||| || ||||| | ||| Sbjct 301 CGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTC 242 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCA 19963 | |||| |||||| || || ||| ||| || | || || || || || || Sbjct 241 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 182 Query 19964 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCA 20023 ||| ||||| || ||||||||||| || || || || || ||||| || |||| || || Sbjct 181 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 122 Query 20024 ATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGT 20083 || |||| |||||| || |||||||| ||||| ||||| || ||| ||| || || || Sbjct 121 ATTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 62 Query 20084 TGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAA 20143 || || | | | || | | || || ||||||||||||||||| | || ||||| || Sbjct 61 GGGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq492030 Length=881 Score = 300 bits (332), Expect = 4e-77 Identities = 336/448 (75%), Gaps = 1/448 (0%) Strand=Plus/Plus Query 19724 CCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAA 19783 |||| | || ||||| |||||| ||||||||||||||| || || ||||||||||| || Sbjct 394 CCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 453 Query 19784 CTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTTCCACATGCTCGG 19843 ||||||| | |||||| | || || ||||| ||||||||||| || || |||||| | || Sbjct 454 CTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 513 Query 19844 TGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAGTTTGGTTACTTC 19903 || ||||| |||||||| || || || ||| ||||||||| | ||||| ||||| Sbjct 514 CGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTC 573 Query 19904 CTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCA 19963 | |||| |||||| || || ||| ||| || | || || || || || || Sbjct 574 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 633 Query 19964 AGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCA 20023 ||| ||||| || ||||||||||| || || || || || ||||| || |||| || || Sbjct 634 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 693 Query 20024 ATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGT 20083 ||||||| |||||| || |||||||| ||||| ||||| || ||| ||| || || || Sbjct 694 ATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 753 Query 20084 TGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAA 20143 || || ||| | || | | || || |||||||||| |||||| | || ||||| || Sbjct 754 GGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAA 813 Query 20144 CTTTAACCAGTCAGTAGTTGAT-GTCAA 20170 || ||||| || ||||||||| ||||| Sbjct 814 TTTCAACCAATCTGTAGTTGATAGTCAA 841 >seq585752 Length=1498 Score = 298 bits (330), Expect = 2e-76 Identities = 480/683 (70%), Gaps = 5/683 (1%) Strand=Plus/Minus Query 19593 CACTTCTTAATAGGAGTAGCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAGATTA 19652 ||||||||| | || ||||| ||| ||| |||||||||| || | | Sbjct 1495 CACTTCTTACTTGGTGTAGCTTGTTACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTG 1436 Query 19653 GGAATGAGACCATGGATATTCGTAGCATATACAGCACCA-CTATCAGCAGCTCTTGCTGT 19711 || ||| || | ||||| | || |||||| |||| | ||| |||| ||| | ||| Sbjct 1435 GGTATGCGATCTTGGATTGTTGTTGCATATTCAGCTCTTGCTA-CAGCTGCTACCGTTGT 1377 Query 19712 GTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTATCTC 19771 || | | |||| | || ||||| |||||| ||||||||||||||| || || || Sbjct 1376 TTTCTTAATCTACCAGATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTC 1317 Query 19772 TGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCCGTT 19831 ||||||||| ||||||||| | |||||||| || | ||||| ||||||||||| || || Sbjct 1316 TGGTACTTTCAACTTTATGATTGTATTCCAGGCTAAGCACAACATCCTTATGCACCCATT 1257 Query 19832 CCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGGAAG 19891 |||||| | ||||| ||||| |||||||| || || | ||| ||||||| | || Sbjct 1256 TCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTCAATGCTATGAATGGTTC 1197 Query 19892 TTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACT-ATGGCT 19950 || || ||||| | || | |||||| || || ||| ||| || | | | || | Sbjct 1196 CTTTGTAACTTCTAGTTTGATTAGGGAAACCACAGAAAATGAATC-CACTAGTGAAGGTT 1138 Query 19951 ATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGA 20010 | || | || ||||| ||||| || ||||||||||| || || || || || ||||| Sbjct 1137 ACAAATGTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGTC 1078 Query 20011 GATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTA 20070 || |||| || |||||| || |||||| || |||||||| ||||| ||||| || ||| Sbjct 1077 GACTGATCTTCCAATATACTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTT 1018 Query 20071 CTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACC 20130 ||| || || | || | | | | || | | || || ||||||| ||||||| Sbjct 1017 CTTGGCCTGTACTAGGTGTCTAGTTCACTACTTTAGGTATTACAACTATGGTTTTCAACT 958 Query 20131 TTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAACAT 20190 | || | ||| || || ||||| || |||||||| | | || | |||| || | Sbjct 957 TAAACGATTTCAATTTCAACCAATCTATAGTTGATAGCCAAGG-CCGTTAATTAATACTT 899 Query 20191 GGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGCTC 20250 ||||||| | | ||| | |||||||| || | ||||||||||| || |||||| Sbjct 898 AGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTTATGCATGAAACTCATGCTC 839 Query 20251 ATAACTTCCCACTTGATTTAGCT 20273 |||||||||| || ||||||||| Sbjct 838 ATAACTTCCCTCTAGATTTAGCT 816 >seq567144 Length=1974 Score = 127 bits (140), Expect = 6e-25 Identities = 127/162 (78%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 20113 GCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAAC 20171 ||||||||||||||||| | || ||||| || || ||||| || ||||||||| ||||| Sbjct 192 GCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAG 251 Query 20172 GGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTT 20231 | | |||| || ||||||||| | | ||| | |||||||| || | |||||| Sbjct 252 GCCGTG-TAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATGGAAGTT 310 Query 20232 ATGCACGAGCGCAATGCTCATAACTTCCCACTTGATTTAGCT 20273 ||||| || || ||||||||||||||||| || ||||||||| Sbjct 311 ATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAGCT 352 >seq126251 Length=485 Score = 95.1 bits (104), Expect = 3e-15 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 19413 GTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAATATT 19472 || ||||| ||||| || |||| || |||| | || | ||| ||| ||||||||||| Sbjct 1 GTGGATATTGATGGTATTTGTGAACCTATTTCTAGGTCTTGAATTTACAGAAACAATATT 60 Query 19473 ATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATCTGG 19532 || || | || | |||| | | || || || |||| ||||| || |||||| Sbjct 61 ATCTCATGTGCCATTATTCCTACTTTTGCAGCTATCGGTTTGCATTTTTACCCAATCTGG 120 Query 19533 GAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTCTTC 19592 ||||| | | ||| |||||||||||||||| ||||| ||| |||| |||| | Sbjct 121 GAAGCAACATCCATTGATAAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTA 180 Query 19593 CACTTCTTAATAGGAGTAGC 19612 ||||| ||| | || ||||| Sbjct 181 CACTTTTTACTTGGTGTAGC 200 >seq9763 Length=353 Score = 80.6 bits (88), Expect = 8e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 19458 TACGGAAACAATATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCAC 19517 |||| |||||||||||| || || || | ||| | || || || | |||| Sbjct 142 TACGAAAACAATATTATCTCAGGTGCCATTATTCTTACTTCTGCAGCTATCGATTTGCAT 83 Query 19518 TTTTATCCGATCTGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATAT 19577 ||||| || ||||||||||| | | | |||||||||||||||||||| ||||| ||| Sbjct 82 TTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAGTGGTTATACAACGGTGGTCCTTAT 23 Query 19578 CAACTTGTTGTCTTCCACTTCT 19599 |||| |||| | ||||||| Sbjct 22 GAACTAATTGTTCTACACTTCT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143079202273728