Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq784841 453 2e-122 seq585748 385 8e-102 seq585752 327 2e-84 seq492030 248 1e-60 seq567144 123 4e-23 seq9763 87.8 3e-12 seq126251 84.2 3e-11 >seq784841 Length=3474 Score = 453 bits (502), Expect = 2e-122 Identities = 697/986 (71%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 211570 TTCTGCGACTGGGTAAC-ATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCT 211628 ||||| ||||| |||| | || | || ||| | | || |||| ||| |||||||| | Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAA-AACCGTCTTTACATTGGATGGGTTGGTGTTTT 2940 Query 211629 TATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCAC 211687 |||||||| | ||| | | | ||||| | ||||| | || ||||| | || | Sbjct 2939 GATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTC 2881 Query 211688 CTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACA 211747 |||| || ||||| || || || |||||||| || |||| || | | ||||| ||| Sbjct 2880 CTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACG 2821 Query 211748 ACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTA 211807 | || ||||| ||||| || |||| |||| || |||||||| || || || || | Sbjct 2820 ATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAA 2761 Query 211808 TCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAA 211867 ||||||||||| || | ||||||||||| | ||||| |||||||||| | | | Sbjct 2760 TCTGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTG 2701 Query 211868 TCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACC 211927 | | |||||| | | || | | |||||||| | |||||||| || | || Sbjct 2700 TTCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCC 2641 Query 211928 GTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCG 211987 || | |||||||| |||||||| | |||| |||| | | ||||| |||| ||| ||| Sbjct 2640 GTCTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCG 2581 Query 211988 CTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTA 212047 |||| ||| | | |||||| | ||||| || || || || ||||||||| |||| | Sbjct 2580 CTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 2521 Query 212048 TATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACC 212107 | || || || |||||||| ||| | ||||||||||| || || |||||||||||||||| Sbjct 2520 TTTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACC 2461 Query 212108 CATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACG 212167 |||| || ||| ||| || || ||| | ||||| || | ||||| ||||||||| | Sbjct 2460 CATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATG 2401 Query 212168 GTTCTCTTG-TTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTAT 212226 |||| |||| | || ||| | ||| | |||||||| | || || || | Sbjct 2400 GTTC-CTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAA 2342 Query 212227 GGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTC 212286 |||||||| || || ||||| ||||| || ||||| || || || || ||||| || || Sbjct 2341 GGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTT 2282 Query 212287 GGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTC 212346 || |||| || ||||| ||| | || |||||| | |||||||||||| | Sbjct 2281 GGCCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTA 2222 Query 212347 GCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTC 212406 || | |||||||| | || | ||||| || || | ||||| |||| ||||| ||| Sbjct 2221 GCTGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTC 2162 Query 212407 AACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCT 212466 ||| |||| || ||||| ||| ||||||| || |||||| ||| || || | Sbjct 2161 AACTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAAT 2102 Query 212467 ACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAAT 212526 ||||||| |||| | | || | || ||||||||| ||||||||||||| ||| | ||| Sbjct 2101 ACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAAT 2042 Query 212527 GCACACAACTTCCCACTTGACTTAGC 212552 || || |||||||| || || ||||| Sbjct 2041 GCTCATAACTTCCCTCTGGATTTAGC 2016 >seq585748 Length=906 Score = 385 bits (426), Expect = 8e-102 Identities = 576/815 (71%), Gaps = 2/815 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAG-CTGCAACAACATGCTTTATC 211668 |||| |||||||||||| | |||||||| | ||| | | | ||||| ||||| Sbjct 815 TTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGACCGCAACTTTTGTATTTATT 757 Query 211669 GTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGT 211728 | || ||||| | || ||||| || ||||| || || || |||||||| || |||| Sbjct 756 ATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGG 697 Query 211729 TCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATC 211788 || | | || || ||||| || ||||| ||||| || |||| |||| |||||| Sbjct 696 TCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCAATC 637 Query 211789 GGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGT 211848 | ||| || || || || ||||||||||||||| | ||||||||||| | ||||| ||| Sbjct 636 GATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTTGATGAGTGGTTATACAACGGT 577 Query 211849 GGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGA 211908 |||||||| | | | | | ||| || | | || | | |||||||| | Sbjct 576 GGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGTGTAGCTTGTTACATGGGTCGT 517 Query 211909 CAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCA 211968 ||||||||||| | |||| | |||||||| |||||||| |||||| |||||||| Sbjct 516 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGGATTGCTGTTGCATATTCAGCT 457 Query 211969 CCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCA 212028 ||||| |||| | | ||||| ||| | | |||||| ||||||| || || || Sbjct 456 CCTGTTGCAGCTGTTACTGCTGTTTTCTTGATCTACCCAATCGGTCAAGGAAGTTTTTCT 397 Query 212029 GACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAA 212088 || ||||||||| |||| || || || || |||||||| ||| | |||||||| || || Sbjct 396 GATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 337 Query 212089 CATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCA 212148 || |||||||||||||||||||| || ||| ||| || || ||| | ||||| || | Sbjct 336 CACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCC 277 Query 212149 TTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGT 212208 ||||| | ||||||| ||||| | || | ||| | ||| | |||||||| | Sbjct 276 CTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCTAGTTTGATCAGGGAAACCACAGAA 217 Query 212209 TTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTT 212268 || || || | |||||||| || || ||||| ||||| || ||||| || || Sbjct 216 AATGAATCCGCTAATGAAGGTTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTA 157 Query 212269 GCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGA 212328 || || ||||| || || || |||| |||||||| | ||| ||||||||| | Sbjct 156 GCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAATTTGCTAGTTTCAACAACTCTCGT 97 Query 212329 AGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGT 212388 |||||||||||||| || | |||||||| | || | | ||| || || | ||| Sbjct 96 TCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTGGGTATCTAGTTCACTGCTTTAGGT 37 Query 212389 ATCTGCACAATGGCATTCAACCTAAATGGATTCAA 212423 || |||| ||||| |||||| |||| || ||||| Sbjct 36 ATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 327 bits (362), Expect = 2e-84 Identities = 478/670 (71%), Gaps = 8/670 (1%) Strand=Plus/Minus Query 211897 TACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTT 211956 |||||||| ||||||||||| | || | | |||||||| ||||||| |||| Sbjct 1471 TACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGTT 1412 Query 211957 GCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAG 212016 || |||||||| | || |||| ||| || ||| ||| | | |||| ||||||| Sbjct 1411 GCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCAA 1352 Query 212017 GGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTA 212076 || || || || ||||||||| |||| || || || || |||||||| ||| | ||| Sbjct 1351 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTA 1292 Query 212077 TTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATG 212136 ||||| || | || |||||||||||||||||||| || ||| |||||| || ||| | Sbjct 1291 TTCCAGGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 1232 Query 212137 TTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGT 212196 ||||| || | |||||| ||||||| | ||||| |||| || ||| | || | Sbjct 1231 TTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAGG 1172 Query 212197 GAAACCACTGGTTTAGATTCACAGAACT-ATGGTTACAAGTTCGGACAAGAAGAAGAGAC 212255 |||||||| | || || || | | | |||||||| | || ||||| ||||| || Sbjct 1171 GAAACCACAGAAAATGAATC-CACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAAC 1113 Query 212256 ATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATT 212315 ||||| || || || || ||||| || || ||| |||| |||||||| ||| | || Sbjct 1112 TTATAATATTGTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTTT 1053 Query 212316 CAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTT 212375 ||||||| | |||||||||||||| || || |||||||| | |||| | ||| Sbjct 1052 CAACAACTCTCGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGTT 993 Query 212376 AACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATC 212435 || || | ||||| || |||| |||||| |||| | ||||| ||||||||||| Sbjct 992 CACTACTTTAGGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAATC 933 Query 212436 AGTTGTTGAT-GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAA 212494 | |||||| || || | | | || ||||| || |||| | | || | || | Sbjct 932 TATAGTTGATAGC--CAAGGCCGTTAATTAATACTTAGGCTGATATCATCAATCGTGCTA 875 Query 212495 ACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCAT 212554 |||||||||||||||||||||| |||| |||| || |||||||| || || |||| Sbjct 874 ACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTAG--- 818 Query 212555 CTGCTAACGA 212564 |||||||||| Sbjct 817 CTGCTAACGA 808 >seq492030 Length=881 Score = 248 bits (274), Expect = 1e-60 Identities = 320/442 (72%), Gaps = 0/442 (0%) Strand=Plus/Plus Query 212004 CCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAA 212063 |||| ||||||| || || || || ||||||||| |||| || || || || ||||| Sbjct 394 CCCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAA 453 Query 212064 CTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGG 212123 ||| ||| | |||||| | || || || |||||||||||||||||||| || ||| ||| Sbjct 454 CTTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGG 513 Query 212124 TGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATC 212183 || || ||| | ||||| || | ||||| ||||||||| | ||| | || || || Sbjct 514 CGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTC 573 Query 212184 TTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACA 212243 | | ||| | |||||||| | || || || | |||||||| || || || Sbjct 574 TAGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCA 633 Query 212244 AGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCA 212303 ||| ||||| || ||||| || || || || ||||| || || || |||| |||||||| Sbjct 634 AGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCA 693 Query 212304 GTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTAT 212363 ||||| ||||||||| | |||||||||||||| || | |||||||| | Sbjct 694 ATATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGT 753 Query 212364 CTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAA 212423 || | ||||| || || | ||||| |||| ||||| |||||| |||| || ||||| Sbjct 754 GGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAA 813 Query 212424 CTTCAACCAATCAGTTGTTGAT 212445 ||||||||||| || |||||| Sbjct 814 TTTCAACCAATCTGTAGTTGAT 835 >seq567144 Length=1974 Score = 123 bits (136), Expect = 4e-23 Identities = 135/179 (75%), Gaps = 3/179 (2%) Strand=Plus/Plus Query 212386 GGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGAT 212445 ||||| |||| ||||| |||||| |||| || ||||| ||||||||||| || |||||| Sbjct 185 GGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGAT 244 Query 212446 GCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATG 212505 ||| || || |||||||| |||| | | || | || |||||||||||| Sbjct 245 AGTCAAGGCCGTGTAATTAGTACTTGGGCTGATATCATCAATCGTGCTAACCTTGGTATG 304 Query 212506 GAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAACGA 212564 ||||||||||| ||| | ||||| || |||||||| || || |||| |||||| ||| Sbjct 305 GAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGATTTAG---CTGCTATCGA 360 >seq9763 Length=353 Score = 87.8 bits (96), Expect = 3e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 211744 AACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTAT 211803 ||||| || ||||| ||||| || ||| |||| || |||| ||| || || || Sbjct 136 AACAATATTATCTCAGGTGCCATTATTCTTACTTCTGCAGCTATCGATTTGCATTTTTAC 77 Query 211804 CCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 || ||||||||||||||| | ||||||||||| | ||||| ||||||||||| Sbjct 76 CCAATCTGGGAAGCAGCATCCGTTGATGAGTGGTTATACAACGGTGGTCCTTA 24 >seq126251 Length=485 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 211693 GTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAACATC 211752 || ||||| || || || ||||||| | || | || | || || | ||||| || Sbjct 1 GTGGATATTGATGGTATTTGTGAACCTATTTCTAGGTCTTGAATTTACAGAAACAATATT 60 Query 211753 ATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGG 211812 ||||| |||| || |||| ||| || |||||||| || || || || |||||| Sbjct 61 ATCTCATGTGCCATTATTCCTACTTTTGCAGCTATCGGTTTGCATTTTTACCCAATCTGG 120 Query 211813 GAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTA 211856 |||||| || | ||||| ||||| | ||||| ||||||||||| Sbjct 121 GAAGCAACATCCATTGATAAGTGGTTATACAACGGTGGTCCTTA 164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 799537307441280