Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq784841 443 2e-119 seq585748 423 2e-113 seq585752 286 4e-72 seq492030 286 4e-72 seq585461 224 1e-53 >seq784841 Length=3474 Score = 443 bits (490), Expect = 2e-119 Identities = 690/984 (70%), Gaps = 2/984 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 || ||| | ||| |||| ||| || || || | ||| |||| ||| ||||||| || Sbjct 2998 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGGTTGGTGTTTTG 2939 Query 170726 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 170784 |||||||| | ||| | || || || || || ||| | || ||||| | |||||| Sbjct 2938 ATGATCCC-TACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGTTGCTCC 2880 Query 170785 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAA 170844 |||||| ||||| || || || | ||||| ||| | || ||| | | ||||| ||| | Sbjct 2879 TCCAGTGGATATTGATGGTATTCGTGAACCTGTTTCTGGGTCTCTACTTTATGGAAACGA 2820 Query 170845 CATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCAT 170904 || ||||| ||||| | |||| |||| || || || || || || || || || Sbjct 2819 TATTATCTCAGGTGCCATTATTCCTACTTCTGCAGCTATCGGTTTGCATTTTTACCCAAT 2760 Query 170905 CTGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTAT 170964 |||||||||| | | | || |||||||| |||||| | |||||||| | || || | Sbjct 2759 CTGGGAAGCAACATCCGTTGATGAGTGGTTATACAACTGTGGTCCTTATGAACTAATTGT 2700 Query 170965 TTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAG 171024 | | |||||| | |||| | || ||||||||| | |||||||| | | | | Sbjct 2699 TCTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAAATTAGTTTCCG 2640 Query 171025 ACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGC 171084 || || ||| |||||||||| | | ||||| | | | ||||| | || || | || Sbjct 2639 TCTGGGTATGCGACCTTGGATTGCTTTTGCATATTTAACTCCTGTTGCAGCTGCTATCGC 2580 Query 171085 AGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 171144 || ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 2579 TGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 2520 Query 171145 CTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCC 171204 || ||||| |||||||| ||| | || |||||||| || |||||||| || |||||||| Sbjct 2519 TTCTGGTACTTTCAACTTTATGATTGTATTCCAAGCTGAGCACAACATCCTTATGCACCC 2460 Query 171205 CTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGG 171264 || || ||| ||| ||||| ||| | ||||| || || |||| ||| ||||| || Sbjct 2459 ATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCCTATTCAATGCTATGCATGG 2400 Query 171265 TTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGG 171324 ||| | | || ||| | | ||||| || || || || || || | || | || Sbjct 2399 TTCCTTGATAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTACTAATGAAGG 2340 Query 171325 CTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGG 171384 || || || || ||||| |||||||| ||||| ||||| || |||||||| || || || Sbjct 2339 TTACAAATTTGGTCAAGAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGG 2280 Query 171385 TAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 || | || ||||| ||| | || ||||||||||||||||||||||||||| | || Sbjct 2279 CCGACTGATATTCCAATATACTAGTTTTAACAACTCTCGTTCATTACACTTCTTCTTAGC 2220 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||||| || | ||||| || || | ||||| | || ||||| ||||| Sbjct 2219 TGCTTGGCCTGTAGTGGGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAA 2160 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 171564 | | ||||| ||||| ||| ||||||| || || ||| | || | | || Sbjct 2159 CTTAAACGGTTTCAATTTCTACCAATCTGTAGTTGATAGTCAAGGCCGTGTAATTAATAC 2100 Query 171565 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 171624 |||| ||| | | || | || |||||||| ||||||||||||||||| | ||||| Sbjct 2099 TTGGGCTGATATCATCAATCGTGCTAACCTTGGTCTGGAAGTTATGCATGAACGTAATGC 2040 Query 171625 ACACAACTTCCCACTAGACCTAGC 171648 || |||||||| || || |||| Sbjct 2039 TCATAACTTCCCTCTGGATTTAGC 2016 >seq585748 Length=906 Score = 423 bits (468), Expect = 2e-113 Identities = 601/839 (72%), Gaps = 10/839 (1%) Strand=Plus/Minus Query 170686 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 170744 ||| || || || | ||| |||| ||||||||||| || |||||||| | ||| | | Sbjct 835 CACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGA 777 Query 170745 CTGCTGCTGCTTGT-TTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGA 170803 | || || |||| || ||| | || ||||| ||||||||||||| ||||| || || Sbjct 776 CCGCAACTT-TTGTATTTATTATTGCTTTCATTACTGCTCCTCCAGTGGATATTGATGGT 718 Query 170804 ATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTA 170863 || | ||||| ||| | || ||| | | || || ||||| || ||||| ||||| | Sbjct 717 ATTCGTGAACCTGTTTCTGGGTCTCTACTTTACGGAAACAATATTATCTCAGGTGCCATT 658 Query 170864 GTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATG 170923 |||| |||| ||||| | || || || || || |||||||||||||| | | Sbjct 657 ATTCCTACTTCTGCAGCAATCGATTTGCATTTTTACCCAATCTGGGAAGCAGCATCCGTT 598 Query 170924 GACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGA 170983 || |||||||| |||||||| |||||||| | || || || | ||| || | |||| Sbjct 597 GATGAGTGGTTATACAACGGTGGTCCTTATGAACTAATTGTTCTACACATCTTACTTGGT 538 Query 170984 ATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGG 171043 | || ||||||||| | |||||||||| | | | || || ||| |||||||| Sbjct 537 GTAGCTTGTTACATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGACCTTGG 478 Query 171044 ATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTT---GCAGTATTCCTTGTGTAT 171100 || ||| ||||| ||||| ||||| |||||| || || || ||| | | || Sbjct 477 ATTGCTGTTGCATATTCAGCTCCTGT---TGCAGCTGTTACTGCTGTTTTCTTGATCTAC 421 Query 171101 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 171160 ||| ||||||| || || |||||||||||||| ||||| || || ||||| |||||| Sbjct 420 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 361 Query 171161 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 171220 || ||| | || ||||| || || |||||||| || |||||||| || || ||| ||| Sbjct 360 TTTATGATTGTATTCCAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 301 Query 171221 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCT 171280 ||||| ||| | ||||| || || |||||| | ||||| ||||| | || | ||| Sbjct 300 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTTCTATGCATGGTTCCTTGGTAAGTTCT 241 Query 171281 TCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 171340 | | ||||| || || || || || || || | || || || || || ||| Sbjct 240 AGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAA 181 Query 171341 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAG 171400 || |||||||| ||||| ||||| || |||||||| || || || || | |||||||| Sbjct 180 GAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAA 121 Query 171401 TATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTC 171460 | ||| |||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 120 TTTGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTG 61 Query 171461 TGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAA 171519 || | | ||| || || | ||||| | || ||||| |||||| | ||||| ||||| Sbjct 60 GGTATCTAGTTCACTGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAACGGTTTCAA 2 >seq585752 Length=1498 Score = 286 bits (316), Expect = 4e-72 Identities = 461/658 (70%), Gaps = 5/658 (1%) Strand=Plus/Minus Query 170993 TACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTA 171052 ||||||||| |||||||||| | | || || ||| || ||||||| ||| Sbjct 1471 TACATGGGTCATGAGTGGGAACTTAGTTTCCTTCTGGGTATGCGATCTTGGATTGTTGTT 1412 Query 171053 GCATACTCAGCACCTGTATCTGCAGCATTTGCAGTATTCCTTGTGTATCCATTCGGTCAG 171112 ||||| ||||| | || | || || | || ||| | | || | ||||||| Sbjct 1411 GCATATTCAGCTCTTGCTACAGCTGCTACCGTTGTTTTCTTAATCTACCAGATCGGTCAA 1352 Query 171113 GGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAACTTCATGTTCGTG 171172 || || |||||||||||||| ||||| || || ||||| |||||||| ||| | || Sbjct 1351 GGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTTATGATTGTA 1292 Query 171173 TTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGTGTAGCAGGTATG 171232 ||||| || | |||||||| || |||||||| || || ||| ||||||||| ||| | Sbjct 1291 TTCCAGGCTAAGCACAACATCCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTA 1232 Query 171233 TTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCTTCTCTAATCAGA 171292 ||||| || | |||| ||| ||| | ||||| | || || ||| | | || || Sbjct 1231 TTCGGCGGCTCCTTATTCAATGCTATGAATGGTTCCTTTGTAACTTCTAGTTTGATTAGG 1172 Query 171293 GAGACAACTGAGAACGAGAGTCAAAACT-ACGGCTATAAGTTCGGACAAGAAGAAGAAAC 171351 || || || || || || | || | | | || || || | || ||||| |||||||| Sbjct 1171 GAAACCACAGAAAATGA-ATCCACTAGTGAAGGTTACAAATGTGGTCAAGAGGAAGAAAC 1113 Query 171352 ATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATT 171411 ||||| ||||| || |||||||| || || ||| || | |||||||| ||| | || Sbjct 1112 TTATAATATTGTAGCCGCTCATGGTTATTTTGGTCGACTGATCTTCCAATATACTAGTTT 1053 Query 171412 CAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTT 171471 |||||||||||||||||||||||||||||| ||| | |||||| | |||| | ||| Sbjct 1052 CAACAACTCTCGTTCATTACACTTCTTCCTAGCTTCTTGGCCTGTACTAGGTGTCTAGTT 993 Query 171472 AACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATC 171531 || || | ||||| || |||| |||||| | |||| ||||| ||||||||||| Sbjct 992 CACTACTTTAGGTATTACAACTATGGTTTTCAACTTAAACGATTTCAATTTCAACCAATC 933 Query 171532 AGTTGTAGAT-GCAAACGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAA 171590 | || ||| || || | | | | || | || ||| | | || | || | Sbjct 932 TATAGTTGATAGCCAA--GGCCGTTAATTAATACTTAGGCTGATATCATCAATCGTGCTA 875 Query 171591 ACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAACTTCCCACTAGACCTAGC 171648 ||||||| ||||||||||||||||||| |||| || |||||||| ||||| |||| Sbjct 874 ACCTTGGTATGGAAGTTATGCATGAAACTCATGCTCATAACTTCCCTCTAGATTTAGC 817 >seq492030 Length=881 Score = 286 bits (316), Expect = 4e-72 Identities = 328/441 (74%), Gaps = 0/441 (0%) Strand=Plus/Plus Query 171101 CCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATCTCAGGTACGTTCAAC 171160 ||| ||||||| || || |||||||||||||| ||||| || || ||||| |||||| Sbjct 395 CCAATCGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAAC 454 Query 171161 TTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCCTTCCATATGGCAGGT 171220 || ||| | || ||| | || || |||||||| || |||||||| || || ||| ||| Sbjct 455 TTTATGATTGTATTCTAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGC 514 Query 171221 GTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACGGTTCTCTAGTGACATCT 171280 ||||| ||| | ||||| || || |||||||| ||||| | ||| | || || ||| Sbjct 515 GTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGATTCCTTGGTAACTTCT 574 Query 171281 TCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACGGCTATAAGTTCGGACAA 171340 | | ||||| || || || || || || || | || || || || || ||| Sbjct 575 AGTTTGATCAGGGAAACCACAGAAAATGAATCCGCTAATGAAGGTTACAAATTTGGTCAA 634 Query 171341 GAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAG 171400 || |||||||| ||||| ||||| || |||||||| || || || || | |||||||| Sbjct 635 GAGGAAGAAACTTATAATATTGTAGCCGCTCATGGTTATTTTGGCCGACTGATCTTCCAA 694 Query 171401 TATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTC 171460 ||||| |||||||||||||||||||||||||||||||| |||| | |||||||| Sbjct 695 TATGCTAGTTTCAACAACTCTCGTTCATTACACTTCTTCCTAGCTGCTTGGCCTGTAGTG 754 Query 171461 TGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAAC 171520 || | ||||| || || | ||||| | || ||||| |||||| | ||||| ||||| Sbjct 755 GGTATCTGGTTCACTGCTTTAGGTATTAGCACTATGGCCTTCAACTTAAACGGTTTCAAT 814 Query 171521 TTCAACCAATCAGTTGTAGAT 171541 ||||||||||| || || ||| Sbjct 815 TTCAACCAATCTGTAGTTGAT 835 >seq585461 Length=917 Score = 224 bits (248), Expect = 1e-53 Identities = 400/584 (68%), Gaps = 21/584 (4%) Strand=Plus/Minus Query 172249 GTTGGTTCTTCGCACCTTCATTTGGTGTCGCAGCAATCTTTCGTTATATTTTATTCATAC 172308 |||||||||| |||||| |||||||| ||||| || ||||| | || | || | | Sbjct 916 GTTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATCCTCTTTTTTC 857 Query 172309 AGGGTTTCCACAATATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTG 172368 | || || || ||| ||||| || ||||||||||||||||| || || ||| || | | Sbjct 856 AAGGATTTCATAATTGGACTCTGAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGG 797 Query 172369 GTGGAGCATTACTATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACA 172428 | | || ||||||||||| || |||||||| || ||| | || || || | |||||| Sbjct 796 GGGCTGCTTTACTATGTGCTATTCATGGTGCTACCGTAGAAAATACTTTATTTGAAGATG 737 Query 172429 CATCACAATACACTGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACAC 172488 ||| || ||| |||| ||| | || || | || || | Sbjct 736 G------------TGATGGCG-----CAAA-TACA---TTCCGTGCTTTTAACCCAACTC 698 Query 172489 AGGAAGAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTA 172548 | | |||||||||||| ||| | || |||||| | || ||||| || || ||||| Sbjct 697 AAGCTGAAGAAACTTATTCCATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGG 638 Query 172549 TAGCATTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTA 172608 | || ||||| || | | | | ||||| ||| ||||||| || ||||| || | ||| Sbjct 637 TTGCTTTTTCCAATACACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTT 578 Query 172609 TGTGGACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTG 172668 | |||| || | || | || ||| | || || ||||| | || || ||||| | Sbjct 577 TATGGATGAGTGCTCTTGGATTAGTCGGTTTGGCCCTGAACCTACGTGCCTATGACTTCG 518 Query 172669 TATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACA 172728 | |||||||| || | || || ||||| || || ||||| || |||||||| || || | Sbjct 517 TTTCTCAAGAAATTCGTGCCGCGGAAGATCCGGAATTTGAGACTTTCTACACAAAAAAAA 458 Query 172729 TTCTTCTTAATGAAGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACT 172788 |||| | || |||||||| | || |||||| | || ||||| || ||||| ||| Sbjct 457 TTCTATTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACC 398 Query 172789 TTGTGTTCCCAGAAGAAGTCTTGCCACGAGGCAACGCACTATAA 172832 |||| ||||| || || | | ||||| || ||||| || ||| Sbjct 397 TTGTATTCCCTGAGGAGCTTCTACCACGTGGAAACGCTCTTTAA 354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564606829192320