Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq548568 111 2e-19 seq405401 111 2e-19 >seq548568 Length=13427 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| ||||| || || ||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || |||| ||| |||| || ||||| | ||| ||||| || || | || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| |||| || ||| |||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63372 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 63431 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| || Sbjct 4774 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCCA 4715 Query 63432 TTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63491 || || || ||||| || || |||||| ||||| | ||||| ||||| | || Sbjct 4714 TTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 4655 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 | || ||||| || || ||| ||| | || || || | |||||||| || Sbjct 4654 ACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATATG 4595 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCT 63592 ||||| || || ||||| ||||| | || |||||||| Sbjct 4594 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 4554 >seq405401 Length=1294 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| ||||| || | ||| |||| || || ||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || |||| ||| |||| || |||||| | ||| ||||| || || | || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 |||||||||||||| |||| || ||| |||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616762206430080