Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq500796 107 2e-18 seq731700 100 3e-16 seq5020 95.1 1e-14 seq693518 89.7 5e-13 seq502676 87.8 2e-12 seq690132 82.4 7e-11 seq621678 82.4 7e-11 >seq500796 Length=7474 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||||||||| | || || ||| | ||||| | || | || | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | ||||| |||||| || || |||||||| ||||| ||||| Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || |||| | || || ||||| ||||||| ||||| | || || || Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 ||||||||||||||||| ||||||| ||||| ||||| | || || Sbjct 1834 ATTCAAAAAGAATCTACCCTCCATCTTGTCCTCCGACTTCGTGGTGG 1880 Score = 91.5 bits (100), Expect = 1e-13 Identities = 105/138 (76%), Gaps = 4/138 (3%) Strand=Plus/Plus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||||||||| || ||||| || || |||||| | || | || || |||||||| ||| Sbjct 2431 GACAAAGAAGGCATCCCTCCAGACCAGCAAAGATTGATCTTCGCTGGTAAACAACTTGAA 2490 Query 26922 GAT-GATAGAAACGT-CAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCC 26979 ||| || || || | || || || ||||| ||||||||||| || ||||||| || | Sbjct 2491 GATGGAAGGACACTTGCA--GATTACAACATCCAAAAAGAATCAACCCTCCATCTTGTGC 2548 Query 26980 TGAGACTTAGAGGAGGAA 26997 || |||| || || |||| Sbjct 2549 TGCGACTGAGGGGTGGAA 2566 >seq731700 Length=3081 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| ||||| |||||||| || || || || ||||| ||||| | || ||||||| Sbjct 1231 AAGATTCAGGACAAGGAAGGGATTCCCCCAGACCAGCAAAGGCTCATCTTCGCCGGCAAA 1290 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 || ||||| |||| | | | || || || |||||||| || ||||| ||| ||||| Sbjct 1291 CAGCTCGAGGATGGCCGCACCCTCGCTGATTACAACATTCAGAAGGAATCCACTCTCCAT 1350 Query 26973 CTGGTCCTGAGACTTAGAGGAGGAA 26997 |||||||| | || | ||||||| Sbjct 1351 CTGGTCCTCCGTCTCCGTGGAGGAA 1375 >seq5020 Length=1186 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || ||||| |||| || ||| | ||||| ||||| | ||| Sbjct 810 AATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATCACTCTCGAAGTCGAAAGCTC 869 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||||||||| | ||||| |||||| ||||| |||||||| ||||| ||||| Sbjct 870 CGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 929 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || | ||||| | | ||| || || || || || | || || | ||| || || | Sbjct 930 GCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGACGGCAG-GACTTTAGCGGATTACA 988 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||||||| || ||||| || | ||||| ||||| Sbjct 989 ACATTCAGAAGGAATCAACACTGCATCTAGTCCT 1022 >seq693518 Length=857 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || |||| || ||| |||||||| | || | |||| Sbjct 521 ATGCAGATCTTTGTCAAGACCCTAACCGGCAAAACGATCACCCTAGAGGTTGAATGCTCT 580 Query 26829 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGGATACCTCCCGATC 26886 || | || || |||| ||| | ||| ||| || || ||||| || |||||||||| Sbjct 581 GATATGATTGACAAAGTTAAAAGCCAAA-ATTCAAGATAAGGAAGGTATCCCTCCCGATC 639 Query 26887 AACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATA 26946 |||| ||| | |||| || ||||| ||| | || |||| |||| | | ||| || | Sbjct 640 AACAGAGATTGATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACA 699 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 | || ||||| ||||| || | ||||| ||||| || || Sbjct 700 ATATCCAAAAGGAATCCGCTCTACATCTCGTCCTCAGCCT 739 >seq502676 Length=6550 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || || ||||| | |||||| || ||| ||||| ||||| || ||||||||||| Sbjct 909 GATACGATCGACAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 968 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || | | |||| || || |||||||| || |||| ||||| | | ||| || ||| Sbjct 969 CAGCGGTTGATTTTCGCTGGGAAACAACTGGAGGATGGTAGAACCCTAGCCGATTACAAC 1028 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||| || ||||| ||| | || || ||||| || || Sbjct 1029 ATTCAGAAGGAATCGACTCTTCACCTAGTCCTCAGGCT 1066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || ||| | ||||||||| | ||||| | ||| | || Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | |||||| |||||| || |||||||| || || ||||||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | | ||||| || || || |||| | | | || |||||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || ||||| || |||||| | |||||||| || Sbjct 1485 ATCCAAAAGGAGTCTACTCTGCATCTGGTTCT 1516 >seq690132 Length=1697 Score = 82.4 bits (90), Expect = 7e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| ||| ||| ||| | || || | ||| | || | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||| || || | || ||| || ||| |||||||||||||| || || |||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATAA 26947 || || ||||| | | ||||||||| | |||| ||| | |||| | || || || | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGA-AAAAACTTTGGCGGATTACAG 1013 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 ||||||||| || || ||| | ||| ||||||| || || Sbjct 1014 CATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCT 1052 >seq621678 Length=9740 Score = 82.4 bits (90), Expect = 7e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 26862 GACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAACTCGAA 26921 ||||| ||||| || || ||||||||||| ||| | |||| || ||||||||| | || Sbjct 898 GACAAGGAAGGTATTCCACCCGATCAACAGAGATTGATTTTCGCTGGCAAACAATTGGAG 839 Query 26922 GATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTG 26981 |||| |||| | | ||| || || || || || ||||| ||| | ||||| ||||| Sbjct 838 GATGGCAGAACCCTAGCCGATTACAATATCCAGAAGGAATCCACTTTACATCTCGTCCTC 779 Query 26982 AGACT 26986 || || Sbjct 778 AGGCT 774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473909952495360