Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq154576 105 2e-17 seq405401 96.9 9e-15 seq551794 95.1 3e-14 >seq154576 Length=476 Score = 105 bits (116), Expect = 2e-17 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || ||||| || ||||||||||| ||| | ||||||||||| ||| || || ||| Sbjct 198 ATTGAGGGCATATTTGACACACTCAAGGAGTGTGCTCTTATCAGCAAATCAGCTGGAGGA 257 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCAC-AGGGGG 363755 ||||| || || | |||||| | |||||| || ||||| || || || || | ||| Sbjct 258 ATTGGGGTCTCTGTACACAATATCCGTGCAAAGGGAAGTTATATCCGTGGAACAACTGGG 317 Query 363756 ATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGA 363815 || || ||||| | ||||| |||||||||||||| | | ||||| || || || || Sbjct 318 AT-GTCTAATGGCATTGTTCCAATGCTTCGTGTGTTCAATGACACTGCTAGATATGTGGA 376 Query 363816 CCAGGGTGGAGG 363827 ||||| || || Sbjct 377 TCAGGGAGGTGG 388 >seq405401 Length=1294 Score = 96.9 bits (106), Expect = 9e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 363637 ATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGA 363696 || ||||| || | ||||||||| ||| | ||||||||||| ||| || || ||| Sbjct 458 ATTGAGGGCATATATGACACACTCAAGGAGTGTGCTCTTATCAGCAAATCAGCTGGAGGA 517 Query 363697 ATTGGTGTATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGA 363756 ||||| || || | |||||| | |||||| | ||||| || || || ||| || Sbjct 518 ATTGGGGTCTCTGTACACAATATCCGTGCAACGGGAAGTTATATCCGTGGAACAACTGGG 577 Query 363757 TACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGAC 363816 || ||||| | ||||| |||||||||||||| | | ||||| || || || || Sbjct 578 ACGTCTAATGGCATTGTTCCAATGCTTCGTGTGTTCAATGACACTGCTAGATATGTGGAT 637 Query 363817 CAGGGTGGAGGAAAGCGCAAAGG 363839 ||||| || || || | ||||| Sbjct 638 CAGGGAGGTGGCAAAAGGAAAGG 660 >seq551794 Length=11183 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 363622 ATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCC 363681 |||||||| ||| ||| ||||| || | ||| ||||| ||| | |||||| |||| | Sbjct 4538 ATGAAGGAGGATAGCATTGAGGGCATATATGATACACTGAAGGAGTGTGCTGTTATCAGC 4479 Query 363682 AAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC-ACAGAACAGTTACAT 363740 || || || ||||||||||| || || || ||||||| |||| | || ||||| Sbjct 4478 AAATCAGCTGGAGGAATTGGTGTTTCTGCTCATAACATTCGTGCTACAGGA-AGCTACAT 4420 Query 363741 TCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATAC 363800 || || ||| ||| || ||||| | ||||| |||||||| ||||| | | || Sbjct 4419 ACGTGGAACAAATGGAACATCTAATGGCATTGTTCCGATGCTTCGAGTGTTCAATGACAC 4360 Query 363801 TGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||| | || || || || || || || ||| | ||||| Sbjct 4359 TGCTCGTTATGTTGATCAAGGAGGTGGCAAGAGAAAAGG 4321 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1290089611533216