Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq621678 120 3e-22 seq5020 107 2e-18 seq500796 104 2e-17 seq693518 95.1 1e-14 seq588422 95.1 1e-14 seq502676 95.1 1e-14 seq607726 87.8 2e-12 seq690132 86.0 5e-12 >seq621678 Length=9740 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| |||||||| ||||||||| | ||||| | || || ||| | Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| ||||||| |||||||| ||||| || || |||||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||| ||||| |||| ||| | | ||||| ||| Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAAC 356 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| || || || | ||||| || Sbjct 355 GTTCAAAAGGAGTCCACTCTGCATTTGGT 327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||||||| ||| | |||| | ||||| ||| | | Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || || || ||||| Sbjct 703 GACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCAG 644 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCG-ATTATAA 24169 ||||| || || | | ||||| ||| | ||||||| || | | | ||| |||| || Sbjct 643 CAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGA-CTTTGGCGGATTACAA 585 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||||||||| || || || | ||||| || |||| Sbjct 584 CATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAG 549 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| |||| || || ||||||| |||| || ||| Sbjct 991 ATGCAGATCTTTGTCAAAACCCTAACGGGGAAGACGATTACTCTCGAGGTTGAGAGTTCT 932 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || || ||||| ||||| ||||| || || ||||||||| Sbjct 931 GATACGATTGATAACGTTAAGGCCAAGATCCAGGACAAGGAAGGTATTCCACCCGATCAA 872 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 |||||| |||||| || ||||| ||| | || |||| ||||| | | |||||| || Sbjct 871 CAGAGATTGATTTTCGCTGGCAAACAATTGGAGGATGGCAGAACCCTAGCCGATTACAAT 812 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 811 ATCCAGAAGGAATCCAC 795 >seq5020 Length=1186 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || ||||| |||| || ||| | || || |||||||||| | Sbjct 810 AATGCAGATCTTCGTCAAAACCCTAACCGGCAAAACCATCACTCTCGAAGTCGAAAGCTC 869 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| |||||| ||||| ||||| || ||||| ||||| Sbjct 870 CGACACCATCGACAATGTCAAGGCCAAGATTCAGGACAAGGAAGGGATCCCTCCGGATCA 929 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATA 24168 ||| | || || | | ||| ||||| || || || | ||| || | ||| ||||| | Sbjct 930 GCAGCGCCTCATCTTTGCCGGGAAGCAGCTGGAGGACGGCAG-GACTTTAGCGGATTACA 988 Query 24169 ACATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||||| || ||||| ||| | ||| |||| Sbjct 989 ACATTCAGAAGGAATCAACACTGCATCTAGT 1019 >seq500796 Length=7474 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||||||||| | || || ||| | || || | || || ||| | | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| |||||| || || ||||| || ||||| ||||| Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || |||| | || |||||||| ||||||| |||| | ||||| || Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 24171 ATTCAAAAAGAATCTAC 24187 ||||||||||||||||| Sbjct 1834 ATTCAAAAAGAATCTAC 1850 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | ||||| || || | ||||||||| | ||||| |||| || ||| | Sbjct 2110 ATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACAATTACTCTCGAGGTTGAGAGCTCA 2169 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | |||||| |||||| || || ||||| || ||||| || || Sbjct 2170 GATACCATTGACAATGTCAAAGCAAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCAG 2229 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||||||||| | | || |||||||| ||||||| | | | | | ||||| || Sbjct 2230 CAGAGACTGATCTTTGCTGGGAAGCAACTTGAAGATGGCCGTACCCTTGCTGATTACAAT 2289 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| |||||||| Sbjct 2290 ATCCAAAAGGAATCTAC 2306 Score = 82.4 bits (90), Expect = 6e-11 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | ||||| || || | ||||| || | ||||| | ||||| || | Sbjct 2337 AATGCAGATTTTTGTGAAGACTCTTACTGGCAAGACAATTACACTGGAAGTTGAAAGCTC 2396 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || || || || | ||||| || || |||||||||||||| ||||| || || Sbjct 2397 AGATACAATAGACAATGTCAAGGCCAAAATCCAGGACAAAGAAGGCATCCCTCCAGACCA 2456 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGT-CAGCGATTAT 24167 || ||| |||| | || || || ||||| |||||| || || || | || ||||| Sbjct 2457 GCAAAGATTGATCTTCGCTGGTAAACAACTTGAAGATGGAAGGACACTTGCA--GATTAC 2514 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||| ||||||||||| || | ||| | ||| | || |||| || ||| Sbjct 2515 AACATCCAAAAAGAATCAACCCTCCATCTTGTGCTGCGACTGAGGGGTGGA 2565 >seq693518 Length=857 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || |||| || ||| |||| ||| | || || || | Sbjct 521 ATGCAGATCTTTGTCAAGACCCTAACCGGCAAAACGATCACCCTAGAGGTTGAATGCTCT 580 Query 24051 GACACCATCGAGCAAGTCAAA--CAAAAGATTACCGACAAAGAAGGCATACCTCCCGATC 24108 || | || || |||| ||| | ||| ||| || || ||||| || |||||||||| Sbjct 581 GATATGATTGACAAAGTTAAAAGCCAAA-ATTCAAGATAAGGAAGGTATCCCTCCCGATC 639 Query 24109 AACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATA 24168 |||||||| |||||| || ||||||||| | || |||| ||||| | | |||||| | Sbjct 640 AACAGAGATTGATTTTCGCTGGCAAGCAATTGGAGGATGGCAGAACCCTAGCCGATTACA 699 Query 24169 ACATTCAAAAAGAATC 24184 | || ||||| ||||| Sbjct 700 ATATCCAAAAGGAATC 715 >seq588422 Length=1254 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || ||| |||| ||| | || |||||| | | Sbjct 286 ATGCAGATCTTCGTCAAGACCCTCACCGGCAAAACGATCACCCTTGAGGTCGAGAGCTCC 227 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | ||||| ||||| ||||| || ||||| || || || || Sbjct 226 GACACCATCGATAACGTCAAGGCTAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 167 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||||||||| || | | | | | || || || ||| Sbjct 166 CAGAGGCTGATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTCGCTGACTACAAC 107 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 106 ATCCAGAAGGAATCAAC 90 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || ||| | || ||||| | || ||| | || |||||| | | Sbjct 514 ATGCAGATCTTCGTCAAGACACTCACCGGAAAGACCATCACCCTTGAGGTCGAGAGCTCC 455 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || || || || || Sbjct 454 GACACCATCGACAACGTAAAGGCTAAGATCCAGGACAAGGAAGGAATCCCCCCGGACCAG 395 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | | |||||||||||||| || | | | | || ||| |||||| Sbjct 394 CAGAGGCTGATCTTTGCTGGCAAGCAACTCGAGGACGGCCGCACGCTCGCCGACTATAAC 335 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 334 ATCCAGAAGGAATCCAC 318 >seq502676 Length=6550 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | ||||| ||||||||||| | | Sbjct 393 ATGCAGATCTTCGTCAAAACCCTAACCGGCAAGACCATTACTCTCGAAGTCGAGAGCTCC 452 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| ||||| || || ||||| || || |||||||| Sbjct 453 GATACCATAGATAATGTCAAGGCCAAGATCCAGGATAAGGAAGGTATTCCCCCCGATCAG 512 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| |||| | | | | || ||||||||| Sbjct 513 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACCCTCGCCGATTATAAT 572 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || || || || Sbjct 573 ATACAGAAGGAGTCCAC 589 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || ||| | ||||||||| | || || | ||||| ||| Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | |||||| |||||| || |||||||| || || ||||||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| || || | | |||||||| || || |||| | | | | ||||||||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 24171 ATTCAAAAAGAATCTAC 24187 || ||||| || ||||| Sbjct 1485 ATCCAAAAGGAGTCTAC 1501 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| || || | || || ||| |||| || | || || ||| Sbjct 849 ATGCAGATCTTTGTCAAGACTCTTACCGGCAAAACGATCACTCTGGAGGTTGAGAGTTCT 908 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || ||||| | |||||| || ||| ||||| ||||| || ||||||||||| Sbjct 909 GATACGATCGACAATGTCAAAGCCAAAATTCAAGACAAGGAAGGTATTCCTCCCGATCAG 968 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || || || ||||| || |||| |||| | | |||||| ||| Sbjct 969 CAGCGGTTGATTTTCGCTGGGAAACAACTGGAGGATGGTAGAACCCTAGCCGATTACAAC 1028 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGT 24199 ||||| || ||||| || |||| |||| Sbjct 1029 ATTCAGAAGGAATCGACTCTTCACCTAGT 1057 >seq607726 Length=2398 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/125 (76%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 24075 AAGATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAG 24134 |||||| || || |||| || |||||||||||||||||| |||||| || || ||| Sbjct 1930 AAGATTCAAGATAAGGAAGT-ATCCCTCCCGATCAACAGAGATTGATTTTCGCTGGAAAG 1988 Query 24135 CAACTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 ||| | || |||| ||||||| | |||||| || || ||||| ||||| || | ||| Sbjct 1989 CAATTGGAGGATGGCAGAAACCTAGCCGATTACAATATCCAAAAGGAATCCACTCTACAT 2048 Query 24195 TTAGT 24199 || || Sbjct 2049 TTCGT 2053 >seq690132 Length=1697 Score = 86.0 bits (94), Expect = 5e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| ||| ||| ||| | ||||| | ||||| ||| | | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | || ||| || ||| ||||||||||| || || || |||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| || || | | ||||| ||| | |||| ||| | |||| | || ||||| | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGA-AAAAACTTTGGCGGATTACAG 1013 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAG 24205 ||||||||| || || || | ||||| || |||| Sbjct 1014 CATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAG 1049 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425774053994640