Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_007767.1 Length=132959 Score E Sequences producing significant alignments: (Bits) Value seq621678 122 7e-23 seq690132 116 3e-21 seq502676 113 4e-20 seq564810 107 2e-18 seq564812 102 7e-17 seq500796 84.2 2e-11 >seq621678 Length=9740 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || || || ||||| |||| | ||| ||| | | Sbjct 763 ATGCAGATTTTCGTCAAAACCCTAACTGGCAAAACAGTTACGCTGGAAGTTGAGAGCTCC 704 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| |||||| || |||||||| | || |||||| Sbjct 703 GACACAATTGATAACGTAAAAGCCAAAATTCAGGACAAAGAAGGAATTCCACCGGATCAG 644 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| ||||||||||| ||||||| | || |||| ||||| ||| Sbjct 643 CAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTACAAC 584 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| ||||| ||| | ||| |||| | || |||| || || Sbjct 583 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 537 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || ||||| ||||| | || |||||||||||||| | || |||| | Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 |||||| ||| | || ||| ||| ||| || ||||| ||| |||| ||||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||||||||| || | || |||| |||| | || ||||| ||| Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAAC 356 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 ||||||| ||||| ||| | ||| |||| Sbjct 355 GTTCAAAAGGAGTCCACTCTGCATTTGGT 327 >seq690132 Length=1697 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || | || ||||| ||||| | ||| ||| | | Sbjct 835 ATGCAGATTTTCGTCAAAACTCTAATTGGCAAAACAATTACGCTGGAAGTTGAGAGCTCC 894 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| |||||| || |||||||| | || ||||| Sbjct 895 GACACAATTGATAATGTAAAAGCCAAAATTCAGGACAAAGAAGGGATTCCACCGAATCAG 954 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||||||||| |||| ||| ||||| |||| ||||| | | Sbjct 955 CAGAGGCTCATCTGTGCAGGCAAACAATTGGAAGTTGAAAAAACTTTGGCGGATTACAGC 1014 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 |||||||| ||||| ||| | ||| |||| | || |||| || || Sbjct 1015 ATTCAAAAGGAGTCCACTTTGCATTTGGTCCTAAGGCTGCGCGGTGG 1061 >seq502676 Length=6550 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||||||||| || || || ||||| ||||| | ||| ||| | | Sbjct 1077 ATGCAGATTTTTGTCAAAACCCTGACCGGTAAAACAATTACTCTGGAAGTTGAGAGCTCC 1136 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| |||||| || ||||||||| | || |||||| Sbjct 1137 GACACAATTGATAACGTGAAAGCCAAAATTCAAGACAAAGAAGGCATTCCACCAGATCAG 1196 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| ||||||||||| ||||| | | || |||| ||||| ||| Sbjct 1197 CAGAGGCTGATATTTGCAGGCAAACAATTGGAAGACGGGAGGACTCTGGCAGATTACAAC 1256 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGTGTTGAGATTGCGAGGAGG 115512 ||||||| ||||| ||| | ||| | || | || |||| || || Sbjct 1257 GTTCAAAAGGAGTCGACTTTGCATCTTGTCCTTAGGCTGCGTGGTGG 1303 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| || |||||||| || || || ||||||||||| || | ||| |||| Sbjct 1305 ATGCAGATATTTGTCAAGACACTGACTGGAAAAACCATCACTCTTGAAGTGGAGAGTTCT 1364 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | || ||| ||| || ||||||||||| |||| ||||| Sbjct 1365 GACACAATTGATAATGTCAAAGCAAAGATACAGGATAAAGAAGGTATCCCACCCGATCAA 1424 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || ||||| | ||| ||||| || | || |||| | || |||| ||||||||| Sbjct 1425 CAGAGGCTTATATTTGCTGGCAAGCAGCTTGAGGATGGCCGTACTCTGGCTGATTATAAC 1484 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 || ||||| ||||||||| | ||| |||| Sbjct 1485 ATCCAAAAGGAGTCTACTCTGCATCTGGT 1513 >seq564810 Length=1937 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || || || |||| ||||| | ||| ||| | | Sbjct 488 ATGCAGATTTTCGTCAAAACTCTAACTGGCCAAACAATTACGCTGGAAGGTGAGAGCTCC 547 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| ||||||| || |||||||| | || |||||| Sbjct 548 GACACAATTGATAACGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 607 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| |||||| |||| |||| || | || |||| | ||| ||| Sbjct 608 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGGGTTACAAC 667 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| ||| | ||| |||| Sbjct 668 ATTCAAAAGGAGTCCACTTTGCATTTGGT 696 >seq564812 Length=421 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| ||||| |||||||| || || || |||| ||||| | ||| ||| | | Sbjct 39 ATGCAGATTTTCGTCAAAACTCTTACTGGCCAAACAATTACGCTGGAAGTTGAGAGCTCC 98 Query 115346 GACACTGTTGGACAAGTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCAG 115405 ||||| ||| | |||||| ||||||| || |||||||| | || |||||| Sbjct 99 GACACAATTGATAATGTAAAAGCCAAAATTGAGGACAAAGAAGGGATTCCACCGGATCAG 158 Query 115406 CAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAAC 115465 || || || || | ||| |||||| |||| |||| || | || |||| ||| ||| Sbjct 159 CAGAGGCTCATCTTTGCAGGCAAATAATTGGAAGTTGGAAGGACTTTGGCGTCTTACAAC 218 Query 115466 ATTCAAAAAGAGTCTACTATACATATGGT 115494 |||||||| ||||| ||| | ||| |||| Sbjct 219 ATTCAAAAGGAGTCCACTTTGCATTTGGT 247 >seq500796 Length=7474 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 ||||| |||||||| ||||| || || || |||||||| || | || ||| | | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || | | |||| || || || ||| ||||| ||||| | || ||||| Sbjct 1714 GATACCATCG-ACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCA 1772 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| || ||||||| ||| || || ||| | ||||||| | ||| | || ||||| || Sbjct 1773 GCAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAA 1832 Query 115465 CATTCAAAAAGAGTCTAC 115482 ||||||||||| ||||| Sbjct 1833 TATTCAAAAAGAATCTAC 1850 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 115286 ATGCAAATTTTTGTCAAAACGCTCACGGGAAAAACCATTACCGTCGAAACGGAGTCCAGC 115345 |||||||||||||| || || || || |||||||| ||||| |||| ||| | Sbjct 2110 ATGCAAATTTTTGTGAAGACTCTTACTGGAAAAACAATTACTCTCGAGGTTGAGAGCTCA 2169 Query 115346 GACACTGTTGGACAA-GTAAAACAAAAAATTGCCGATAAAGAAGGCGTCCCCGTTGATCA 115404 || || || ||||| || ||| ||| || ||||| ||||| | || ||| || Sbjct 2170 GATACCATT-GACAATGTCAAAGCAAAGATCCAGGATAAGGAAGGTATTCCTCCTGACCA 2228 Query 115405 GCAAAGACTTATTTATGCGGGCAAACAATTAGAAGATGACAAAACCATGGCCGATTATAA 115464 ||| ||||| || | ||| || || ||| | ||||||| | ||| | || ||||| || Sbjct 2229 GCAGAGACTGATCTTTGCTGGGAAGCAACTTGAAGATGGCCGTACCCTTGCTGATTACAA 2288 Query 115465 CATTCAAAAAGAGTCTAC 115482 || ||||| || ||||| Sbjct 2289 TATCCAAAAGGAATCTAC 2306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421226506322560