Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq502676 129 5e-25 seq621678 120 2e-22 seq690132 111 1e-19 seq564810 100 2e-16 seq731700 96.9 3e-15 seq5020 96.9 3e-15 seq564812 95.1 1e-14 seq588422 84.2 2e-11 >seq502676 Length=6550 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || || | ||||| || ||||||||||| | |||||| || ||| Sbjct 1303 CCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGCC 1244 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | |||| |||||||||||||| ||| | || |||| ||| || || || Sbjct 1243 AGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGGA 1184 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| |||||||| ||||| ||| ||||| | | | |||||| | ||| Sbjct 1183 ATGCCTTCTTTGTCTTGAATTTTGGCT--TTCACGTTATCAATTGTGTCGGAGCTCTCAA 1126 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| |||||||| |||||||||||||||||||| Sbjct 1125 CTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq621678 Length=9740 Score = 120 bits (132), Expect = 2e-22 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||||| |||||||||||||| |||||||| || ||| Sbjct 537 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCC 596 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | || |||||||||||||| ||| | ||||||| ||| || ||| || Sbjct 597 AAAGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGA 656 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| || || | | | |||||| | ||| Sbjct 657 ATTCCTTCTTTGTCCTGAATTTTGGCT--TTTACGTTATCAATTGTGTCGGAGCTCTCAA 714 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || | ||||| || || || |||||||| ||||||||||| Sbjct 715 CTTCCAGCGTAACTGTTTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| |||||| |||||||||||||| | |||||| || || | |||| | ||| Sbjct 324 AGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCC 383 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | || ||||||||| | || |||| |||||| || || | |||||||||||| Sbjct 384 TCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCC 443 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||||| || || | | | |||||| | |||| |||| || |||| Sbjct 444 TGAATCTTTGCT--TTGACATTATCAATAGTGTCAGAGCTCTCCACCTCCAGAGTAATGG 501 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| ||||| ||||| |||||||| Sbjct 502 TTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 >seq690132 Length=1697 Score = 111 bits (122), Expect = 1e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||| || |||| ||||| |||||||||||||| ||| |||| || ||| Sbjct 1061 CCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGCTGTAATCCGCC 1002 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||||| | | |||||||||||||| ||| | || |||| ||| || | | || Sbjct 1001 AAAGTTTTTTCAACTTCCAATTGTTTGCCTGCACAGATGAGCCTCTGCTGATTCGGTGGA 942 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| ||||| ||| || || | | | |||||| | ||| Sbjct 941 ATCCCTTCTTTGTCCTGAATTTTGGCT--TTTACATTATCAATTGTGTCGGAGCTCTCAA 884 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||| || | || |||||||| ||||||||||| Sbjct 883 CTTCCAGCGTAATTGTTTTGCCAATTAGAGTTTTGACGAAAATCTGCAT 835 >seq564810 Length=1937 Score = 100 bits (110), Expect = 2e-16 Identities = 154/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || |||| ||||| |||||||||||||| |||||||| | |||| || | | Sbjct 703 CCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAACCCGCCAAAGTCCTTCC 644 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 | ||||||| |||||| ||| | || |||| ||| || ||| || | || ||||| Sbjct 643 AACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTT 584 Query 16840 GTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| |||||| ||| || || | | | |||||| | ||| ||||| || Sbjct 583 GTCCTCAATTTTGGCT--TTTACGTTATCAATTGTGTCGGAGCTCTCACCTTCCAGCGTA 526 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| || || || |||||||| ||||||||||| Sbjct 525 ATTGTTTGGCCAGTTAGAGTTTTGACGAAAATCTGCAT 488 >seq731700 Length=3081 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/231 (70%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | ||| |||| ||| || |||||||||||||| |||||||| || || Sbjct 1602 CCCACCACGGAGGCGCAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGC 1543 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| | ||||| || || | || |||| |||||||||| || Sbjct 1542 AAGGGTACGGCCATCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGG 1483 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| || || ||| || || | | | | || || | ||| Sbjct 1482 GATTCCCTCCTTGTCCTGGATCTTGGCT--TTAACGTTGTCAATTGTATCTGAGCTTTCC 1425 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||| ||||| || || || || ||||||||||| ||||||||| Sbjct 1424 ACCTCAAGGGTAATGGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCATT 1374 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || || | || || ||||||||||| || || ||||| || || Sbjct 2513 CCACCACGGAGCCGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAATCCGCA 2454 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || | ||||| | || || || ||| ||||||||| ||| || || ||| Sbjct 2453 AGAGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGAGGG 2394 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| ||| || | | | | ||||| |||| Sbjct 2393 ATACCCTCCTTGTCTTGAATTTTTGCCTTGACATTGTCAATCGTGTCCGAACTCTCCACC 2334 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| ||||| || || || ||||| || || ||||| ||||||||| Sbjct 2333 TCCAGAGTGATTGTCTTCCCTGTCAGGGTCTTAACAAATATCTGCATT 2286 >seq5020 Length=1186 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | || || | |||||| || || ||||| || |||||||| || || Sbjct 1037 CCGCCGCGTAGGCGAAGGACTAGATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCT 978 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || || ||||||||| || || || ||| | || || ||||| || ||| ||| Sbjct 977 AAAGTCCTGCCGTCCTCCAGCTGCTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGG 918 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | ||| || | | | | |||||| | || | Sbjct 917 ATCCCTTCCTTGTCCTGAATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGACT 858 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | ||||||||||| ||||| || |||||||| || ||||||||| Sbjct 857 TCGAGAGTGATGGTTTTGCCGGTTAGGGTTTTGACGAAGATCTGCATT 810 >seq564812 Length=421 Score = 95.1 bits (104), Expect = 1e-14 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 16720 CCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGC 16779 ||| || |||| ||||| |||||||||||||| |||||||| |||| || | | Sbjct 254 CCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAAGACGCCAAAGTCCTTCC 195 Query 16780 GTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTT 16839 | ||||||| |||||| ||| | || |||| ||| || ||| || | || ||||| Sbjct 194 AACTTCCAATTATTTGCCTGCAAAGATGAGCCTCTGCTGATCCGGTGGAATCCCTTCTTT 135 Query 16840 GTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTG 16897 ||| |||||| ||| || || | | | |||||| | ||| ||||| || Sbjct 134 GTCCTCAATTTTGGCT--TTTACATTATCAATTGTGTCGGAGCTCTCAACTTCCAGCGTA 77 Query 16898 ATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || |||| || || || |||||||| ||||||||||| Sbjct 76 ATTGTTTGGCCAGTAAGAGTTTTGACGAAAATCTGCAT 39 >seq588422 Length=1254 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || || || ||||| || ||||||||||| || | ||| | ||||| Sbjct 75 AGGACCAGGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGCGAGGGTGCGGCCGTCC 134 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | ||| ||||| || | || |||| ||| ||||| || | |||||| ||||| Sbjct 135 TCGAGTTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCC 194 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | |||||| | ||| || | |||||| | Sbjct 195 TGGATCTTAGC--CTTGACGTTATCGATGGTGTCGGAGCTCTCGACCTCAAGGGTGATCG 252 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||| || || ||||| || |||||||| Sbjct 253 TTTTGCCGGTGAGGGTCTTGACGAAGATCTGCAT 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 401166592201120