Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq548568 116 5e-21 seq405401 116 5e-21 >seq548568 Length=13427 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| ||||| || |||||||||||| | ||| | |||| | Sbjct 4436 GTTCCAGCATTGAAAAGGGTGGGAGACGCATGAGTAAACCATCGCTGAGATAACAGATGG 4377 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || |||| ||| |||| || ||||| | ||| ||||| || || | || | ||| || Sbjct 4376 TATGTCTTTATAACTGAATCAATATCATCCTTG-TGAATACCCACAGAAACCCTCATCAA 4318 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 4317 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 4258 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||||||||| |||| || ||| |||| || || || || Sbjct 4257 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 4210 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 4774 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGGAGCATTGGAACAATGCCA 4715 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || | ||||| || || |||||| ||||| | ||||| ||||| | || Sbjct 4714 TTAGACATTCCATTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 4655 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 4654 ACCCCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTGAGTGTGTCATATATG 4595 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 4594 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 4554 >seq405401 Length=1294 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | ||| |||| || |||||||||||| | ||| | |||| | Sbjct 309 GTTCCAGCATTGAAAAGGGTGGGAGTCGCATGAGTAAACCATCGCTGAGATAACAGATGG 250 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || |||| ||| |||| || |||||| | ||| ||||| || || | || | ||| || Sbjct 249 TATGTCTTTATAACTGAATCAATATCCTCCTTG-TGAATACCCACAGAAACCCTCATCAA 191 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||||||||| |||||||| | ||| | | || || | ||| ||| |||| | Sbjct 190 CATGTGCTGAGGCCTTTCAACAACCTTCCCTTGAACCTTTAAGAGGTAAGATCTTTCGAG 131 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 |||||||||||||| |||| || ||| |||| || || || || Sbjct 130 GGTTTTAAAACCAAAGTAGTCATAGTCAAAATCTCTGTCATATATTAT 83 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||||||||| | |||||||| |||| ||| | || | | |||||||| ||| ||| Sbjct 645 CCTCCCTGATCCACATATCTAGCAGTGTCATTGAACACACGAAGCATTGGAACAATGCCA 586 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || || || ||| | || || |||||| ||||| | ||||| ||||| | || Sbjct 585 TTAGACGTCCCAGTTGTTCCACGGATATAACTTCCCGTTGCACGGATATTGTGTACAGAG 526 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | || ||||| || || ||| ||| | || || || | || ||||| ||| Sbjct 525 ACCCCAATTCCTCCAGCTGATTTGCTGATAAGAGCACACTCCTTGAGTGTGTCATATATG 466 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCT 63447 ||||| ||||| ||||| ||||| | || |||||||| Sbjct 465 CCCTCAATACTGTCATCTTTCATGCATATTAAGAAACAGCT 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627340921324800