Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq492558 95.1 1e-14 seq412663 93.3 5e-14 seq670442 91.5 2e-13 seq587303 89.7 6e-13 seq360070 89.7 6e-13 seq461663 87.8 2e-12 seq166306 87.8 2e-12 seq555903 86.0 7e-12 seq310259 84.2 2e-11 seq147377 84.2 2e-11 seq65438 82.4 8e-11 >seq492558 Length=4159 Score = 95.1 bits (104), Expect = 1e-14 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 ||||||||| ||||||||||||||||||||||||| | ||| |||||||| | | || Sbjct 3582 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCTCGTAAGAGA 3641 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATT 126351 |||||||||| || ||||| ||||||| || Sbjct 3642 GCGTGGGTTCAAATCCCACTTCTGACAACTT 3672 >seq412663 Length=933 Score = 93.3 bits (102), Expect = 5e-14 Identities = 74/88 (84%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| ||||||||||||||||||||||||| | ||| |||||||| | | | ||||| Sbjct 600 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTTCACGTTAGTGAGCG 541 Query 126324 TGGGTTCGAACCCCACACCTGACAAATT 126351 ||||||| || ||||| ||||||| || Sbjct 540 TGGGTTCAAATCCCACTTCTGACAAGTT 513 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 396 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGGCTCAAGTTCTGGTTCACGTGAGTGAGCG 337 Query 126324 TGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| |||||| | || |||| ||||| || || Sbjct 336 TGGGTTCAAATCCCACTTCTGACATGTATTTTTTATGAGAATTGTTTTT 288 >seq670442 Length=979 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAGC 126322 ||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | || Sbjct 549 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGGGC 490 Query 126323 GTGGGTTCGAACCCCACACCTGACAAATTATT 126354 |||||||| || ||||| ||||||| || || Sbjct 489 GTGGGTTCAAATCCCACTTCTGACAACTTTTT 458 >seq587303 Length=7078 Score = 89.7 bits (98), Expect = 6e-13 Identities = 72/86 (84%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGAG 126321 |||||||| ||||||||||||||||||||||||| | ||| |||||| | || || | | Sbjct 6375 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGCTCTGGTCCTCTAACGAGGG 6434 Query 126322 CGTGGGTTCGAACCCCACACCTGACA 126347 ||||||||| || ||||| |||||| Sbjct 6435 CGTGGGTTCAAATCCCACTTCTGACA 6460 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | Sbjct 6230 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTAACGAGG 6289 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 6290 GCGTGGGTTCAAATCCCACTTCTGACA 6316 >seq360070 Length=6625 Score = 89.7 bits (98), Expect = 6e-13 Identities = 81/100 (81%), Gaps = 3/100 (3%) Strand=Plus/Plus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| |||||||| || | ||||||| Sbjct 448 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGATCTGGT--CCGAAAGGGCGTGGG 505 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 ||| || | |||| || |||| |||| ||| | |||||| Sbjct 506 TTCAAATCTCACAGTTGTCAAACTATT-TTGAAGTTTTTG 544 >seq461663 Length=867 Score = 87.8 bits (96), Expect = 2e-12 Identities = 80/100 (80%), Gaps = 2/100 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 649 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 592 Query 126328 TTCGAACCCCACACCTGACAAATTATTATTGGAATTTTTG 126367 ||| || |||||| ||| ||| || || | |||||||| Sbjct 591 TTCAAATCCCACAGCTGTCAATTTGTTTTACTAATTTTTG 552 >seq166306 Length=536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 72/87 (83%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCT--CGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| |||||| | || || | Sbjct 339 ACGGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCCTCTAACGAGG 280 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 279 GCGTGGGTTCAAATCCCACTTCTGACA 253 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 2/87 (2%) Strand=Plus/Minus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGG--TTCCCTCGGGA 126320 || |||||| ||||||||||||||||||||||||| | ||| ||||| ||| || | Sbjct 483 ACGGTCAGGGTGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGTCTTCTAACGAGG 424 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||| || ||||| |||||| Sbjct 423 GCGTGGGTTCAAATCCCACTTCTGACA 397 >seq555903 Length=1044 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/87 (83%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || | Sbjct 821 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 764 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 763 CGTGGGTTCAAATCCCACTTCTGACAA 737 >seq310259 Length=3486 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327 ||| |||||||||||||||||||||||||||||| | |||||| || | ||||||| Sbjct 2698 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 2641 Query 126328 TTCGAACCCCACACCTGACAAATTATTA 126355 ||| || |||||| ||| || ||| ||| Sbjct 2640 TTCAAATCCCACAGCTGTCATATTCTTA 2613 >seq147377 Length=615 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/109 (78%), Gaps = 5/109 (5%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAGCG 126323 |||||| |||||||||||||||||||||||| | ||| |||||||| | | ||||| Sbjct 583 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGGCTCAAGTTCTGGTTCACGTGAGTGAGCG 524 Query 126324 TGGGTTCGAACCCCACACCTGACA---AATTATTATTGGAATTTTTGTT 126369 ||||||| || ||||| |||||| | || |||| ||||| || || Sbjct 523 TGGGTTCAAATCCCACTTCTGACATGTATTTTTTATGAGAATTGTTTTT 475 >seq65438 Length=771 Score = 82.4 bits (90), Expect = 8e-11 Identities = 71/87 (82%), Gaps = 6/87 (7%) Strand=Plus/Minus Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321 |||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || | Sbjct 282 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGTGAGAAGG 225 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||| || ||||| ||||||| Sbjct 224 CGTGGGTTCAAATCCCACTTCTGACAA 198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 551331951861120