Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq544048 120 6e-22 seq677466 116 8e-21 seq337069 95.1 2e-14 seq783396 93.3 9e-14 seq491795 93.3 9e-14 seq377275 93.3 9e-14 seq285912 93.3 9e-14 seq764486 91.5 3e-13 seq591318 91.5 3e-13 seq555530 91.5 3e-13 seq363624 91.5 3e-13 seq87388 91.5 3e-13 seq623326 87.8 4e-12 seq310655 86.0 1e-11 >seq544048 Length=11039 Score = 120 bits (132), Expect = 6e-22 Identities = 114/146 (78%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 218656 AAGGTCGCTCAGTTTTCTGGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAG 218715 || || || ||||| |||||||||||||||||| ||| | |||||||| || ||||| Sbjct 5078 AAAGTTGCACAGTTCTCTGGTTATGTATCCGAACATTCGGCATACCATCATGGAGAGCAA 5137 Query 218716 AGTCTGCAGGGTGCCATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAAC 218775 ||||| || | || | || ||||| || || |||||||||||||||||||| || Sbjct 5138 AGTCTTGCTAGTACAATAATTGGTATGGCTCAAGATTATGTGGGCAGTAACAACATAAAT 5197 Query 218776 TTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||| || || |||||||||||||| Sbjct 5198 CTGCTTCTACCAAACGGTCAGTTTGG 5223 >seq677466 Length=8805 Score = 116 bits (128), Expect = 8e-21 Identities = 572/895 (64%), Gaps = 28/895 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 || |||||||| | ||| |||| ||| ||| | |||||| | || || ||||| Sbjct 7343 TCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCATCCAATCAAATGGGTTCTGC 7402 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| || || | || | | || || |||||||| || | Sbjct 7403 ACATTGTACATCTTCCCATACCCCAACGCATTCAGCAATCGATCCGCCACAAATTCAATG 7462 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACG-ACAAGGAATTGCCTCACAGAT 251741 ||||| | ||||| |||| ||||| || | || ||| ||| || | || || || | Sbjct 7463 TACTGGCTCATCAATTCACCATTCATCCCCACCA-ACGCACACGGCAGCGCATCGCACAC 7521 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 |||||| | ||| | |||| || ||| |||| || ||||||| | || ||| Sbjct 7522 AAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCCTTCACTTTCTCCTCGCTCAG 7581 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| ||| |||| ||| || || | ||| ||| | ||| || ||||| || | Sbjct 7582 CTTCATCTTCAGCAGGCTGTAAAGCAGGCACGC-AAAGTCACAGTGGAGGCCCTCATCCC 7640 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 || || ||||| || | | || |||||||||| ||||| ||| | ||||||| Sbjct 7641 TGGAAATCAATTCGTTTGAAAAAGTCAATCCAGGCATCAATCCACGCTTCTTCAGCCAGA 7700 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGC 251980 | || ||||| ||| ||||||||| | | ||||| ||||| | | || | | | Sbjct 7701 AAATCGCGCAGAAGCTTCCAGAGAAAAAAATCCCCTCCACACAAGCAAAGGCGATTATCC 7760 Query 251981 GCTCAGCAAACGA--CTTGTCCTGCGA--CAA-GAACTTCTGTGCCCATGCTGCCTT-CT 252034 |||||||||| || | || ||| ||| | | | ||||| ||||| | Sbjct 7761 GCTCAGCAAAGGATTCAGAGCCATCGATCCAACGGA-----GGGCCCAATTGGCCTTGCG 7815 Query 252035 TTCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCC 252093 || | ||| |||| || || ||||| ||| || ||| || || | ||| Sbjct 7816 TTGGA--CGCAAGGGACAGTATCAATTGCGCGAAAAAGGGAGCTCTTTTCTTCGGAATCC 7873 Query 252094 TCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATC 252153 | |||| | || || |||||| ||||||||| || ||||| ||| || || Sbjct 7874 TTGATGTAGGATTCGAGGAGGAGACTGTACATCTCGGAGTGGATATTCTCGATGGCGATT 7933 Query 252154 TGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCGT--GGAAAAGTTGTTTG 252211 ||| | | ||||| || || || | | ||| ||| | |||| | | | Sbjct 7934 TGGAAGCCGTAGAAGGCGCGGGCCTCAGAGACCTGGACCTCCTTCATGAAACG--GCCGG 7991 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | ||||| | || ||||||||| | | || |||||| | || | | |||||||| Sbjct 7992 CGAGATTCTCGAGAACGATGCCATCGGAGGCGGCGAAGAAGGCGAGGACGTGCTTGATGA 8051 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTCAGAGGAA 252331 |||| ||||| ||| |||| ||| ||||| | ||| ||||| || | | Sbjct 8052 AGTGGCGCTCGTCGGGAGTGAGGGAGTC---CCAGTGGCGAATATCCTGGGACAAATCGA 8108 Query 252332 CTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGT 252391 | || || | |||||||| | || | | || ||||||||||| | | | | ||||| Sbjct 8109 CCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCTTTCTTGTACATCTCCCAGATTTGAGGGT 8168 Query 252392 ACTTGATTGGGAAAGCAGAGTACTTGCGGTTGCCGATGTCAGCGAGTAGGGGCTC 252446 ||| ||| ||||| | || | ||||| | | || ||||| |||||||| Sbjct 8169 ACTGGATAGGGAACATACAGAA---GCGGTCGGGGTTGGGGGCGAGAAGGGGCTC 8220 >seq337069 Length=3085 Score = 95.1 bits (104), Expect = 2e-14 Identities = 63/70 (90%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 142499 AGATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTT 142558 ||| |||||| |||||||||||||||||||| || ||||||| || ||||||||||||| Sbjct 2121 AGAAAGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTT 2180 Query 142559 CGAGCCCCAC 142568 |||||||||| Sbjct 2181 CGAGCCCCAC 2190 >seq783396 Length=10173 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5461 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5520 Query 142563 CCCCAC 142568 |||||| Sbjct 5521 CCCCAC 5526 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 5631 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5690 Query 142563 CCCCAC 142568 |||||| Sbjct 5691 CCCCAC 5696 >seq491795 Length=6265 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 735 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 676 Query 142563 CCCCAC 142568 |||||| Sbjct 675 CCCCAC 670 >seq377275 Length=3900 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 2081 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2022 Query 142563 CCCCAC 142568 |||||| Sbjct 2021 CCCCAC 2016 >seq285912 Length=324 Score = 93.3 bits (102), Expect = 9e-14 Identities = 60/66 (91%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 245 AGCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 304 Query 142563 CCCCAC 142568 |||||| Sbjct 305 CCCCAC 310 >seq764486 Length=13414 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 12889 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12948 Query 142564 CCCAC 142568 ||||| Sbjct 12949 CCCAC 12953 >seq591318 Length=1356 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 884 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 825 Query 142564 CCCAC 142568 ||||| Sbjct 824 CCCAC 820 >seq555530 Length=4043 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 241 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 300 Query 142564 CCCAC 142568 ||||| Sbjct 301 CCCAC 305 >seq363624 Length=1404 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 1041 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 982 Query 142564 CCCAC 142568 ||||| Sbjct 981 CCCAC 977 >seq87388 Length=334 Score = 91.5 bits (100), Expect = 3e-13 Identities = 59/65 (91%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 178 GCCCGTCTAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 237 Query 142564 CCCAC 142568 ||||| Sbjct 238 CCCAC 242 >seq623326 Length=8400 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1192 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1251 Query 142563 CCCCAC 142568 |||||| Sbjct 1252 CCCCAC 1257 >seq310655 Length=1007 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| |||||||||||| ||||||| || ||||||| || |||||||||||||||||| Sbjct 821 GCCCGTCTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 880 Query 142564 CCCAC 142568 ||||| Sbjct 881 CCCAC 885 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1017376695036208