Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq500796 100 2e-16 seq621678 89.7 4e-13 seq731700 84.2 2e-11 >seq500796 Length=7474 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || || || || || || || |||||| |||| ||| | Sbjct 2565 AATGCAGATCTTCGTGAAGACTTTGACAGGAAAGACGATTACCTTGGAGGTTGAAAGTTC 2624 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 ||| || | | | || ||||| || ||| ||||| ||||| | ||| | || Sbjct 2625 AGACACAATTGACAATGTTAAGGCCAAGATTCAGGATAAGGAGGGCATCCCTCCTGATCA 2684 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||| | | ||||||||||| || || || |||||| | || | ||||||||||| Sbjct 2685 ACAGCGTTTGATCTTTGCTGGGAAGCAGCTTGAAGATGGTAGGACACTTGCCGATTACAA 2744 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || ||||| || |||||||||||| ||||||| ||||| | ||||| Sbjct 2745 CATCCAGAAAGAGTCTACTCTTCATCTGGTATTGCGTTTGAGGGGAGG 2792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | ||||| | || || |||||||| || |||| || | | Sbjct 1654 ATGCAGATTTTTGTAAAAACTCTTACCGGTAAAACCATCACTCTGGAGGTTGAGAGCTCC 1713 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| || ||| ||||| || || | ||| | | || Sbjct 1714 GATACCATCGACAATGTCAAGGCTAAGATTCAAGATAAGGAAGGGATTCCTCCAGATCAG 1773 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||| |||||||| || ||||| |||||| | |||| | || ||||||||| Sbjct 1774 CAGAGGCTTATTTTTGCTGGAAAGCAACTTGAAGATGGTAGAACTCTTGCAGATTACAAT 1833 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 ||||| || |||||||| || ||| Sbjct 1834 ATTCAAAAAGAATCTACCCTCCAT 1857 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | || || | || || |||||||| || | || ||| || | Sbjct 1882 ATGCAAATCTTTGTGAAGACTCTTACTGGTAAAACCATAACGCTCGAGGTTGAAACCTCT 1941 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | |||| ||| ||| ||| ||||| || || | ||| | | || Sbjct 1942 GATACCATCGATAATCTCAAGGCAAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 2001 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || ||||||||||| || ||||| |||||| ||| | || ||||||||| Sbjct 2002 CAGAGGCTAATCTTTGCTGGAAAGCAACTTGAAGATGGCCGGACTCTTGCAGATTACAAT 2061 Query 22014 ATTCAGAAGGAATCTACTCTTCA 22036 || ||||| || ||||| || || Sbjct 2062 ATCCAGAAAGAGTCTACACTCCA 2084 >seq621678 Length=9740 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| |||||| | |||||||| || || ||||||||||| |||| ||| | | Sbjct 535 ATGCAGATATTTGTGAAAACATTGACTGGAAAAACCATTACTCTGGAGGTGGAGAGCTCT 476 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||| ||| || |||||||| | || | | ||| Sbjct 475 GACACTATTGATAATGTCAAAGCAAAGATTCAGGACAAAGAGGGCATCCCACCAGATCAA 416 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || ||||| ||||| || || || ||| | ||| | || |||||||| Sbjct 415 CAGAGGCTGATATTTGCGGGCAAGCAGCTCGAGGATGGACGAACCCTTGCTGATTACAAC 356 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 |||| ||||| || ||||| ||| |||| Sbjct 355 GTTCAAAAGGAGTCCACTCTGCATTTGGT 327 Score = 86.0 bits (94), Expect = 4e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| ||||||||||| ||||||||| | |||||| || ||| |||| |||||| Sbjct 646 CAGCAGAGGCTTATCTTTGCAGGCAAACAATTGGAAGATGGAAGGACTTTGGCGGATTAC 587 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGT 22042 || ||||| ||||| || ||| | ||| |||| Sbjct 586 AACATTCAAAAGGAGTCCACTTTGCATTTGGT 555 >seq731700 Length=3081 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || | || || | || || || ||||||||| ||||| ||| | Sbjct 2059 ATGCAAATCTTCGTCAAGACCCTGACAGGGAAGACCATTACCCTGGAAGTGGAGAGTTCG 2118 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| || ||| || || || ||| | || | |||| Sbjct 2119 GACACCATTGACAATGTTAAGGCTAAGATTCAAGACAAGGAAGGTATCCCACCAGACCAG 2178 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || || |||||||| || || ||||| ||| | || |||| ||||| ||| Sbjct 2179 CAGAGGCTGATTTTTGCTGGGAAGCAGCTAGAGGATGGCAGGACCTTGGCGGATTATAAT 2238 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||||||||||| || ||||| || |||| Sbjct 2239 ATTCAGAAGGAGTCGACTCTGCACTTGGT 2267 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| |||||| |||| || | || || || || || || |||| ||| | Sbjct 2286 AATGCAGATATTTGTTAAGACCCTGACAGGGAAGACAATCACTCTGGAGGTGGAGAGTTC 2345 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || ||| | | | || | ||| ||||||| || || |||||| | ||| | || Sbjct 2346 GGACACGATTGACAATGTCAAGGCAAAAATTCAAGACAAGGAGGGTATCCCTCCTGATCA 2405 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| ||||| |||||||| || || ||||| ||| | ||| | || |||||||| Sbjct 2406 GCAGAGGCTTATTTTTGCTGGGAAGCAGCTAGAGGATGGCAGGACTCTTGCGGATTACAA 2465 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||| |||||||| || || || || Sbjct 2466 TATCCAGAAGGAGTCCACCCTCCA 2489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354658014057952