Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq794097 248 2e-60 seq677466 174 3e-38 seq611863 138 2e-27 >seq794097 Length=14469 Score = 248 bits (274), Expect = 2e-60 Identities = 463/676 (68%), Gaps = 8/676 (1%) Strand=Plus/Minus Query 42309 ATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTGGCCAAGGAC 42368 |||||||||||||| ||| |||| |||||| ||||| || | || ||||| ||||| Sbjct 12532 ATGTACAAGAAGGCCCAGGCCTCCTTCTGGACTGCCGACGAAGTCGATTTGGCCCAGGAC 12473 Query 42369 ACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCC 42428 || |||||| || || ||| ||| |||| |||| || | || ||| Sbjct 12472 CTCTCCCACTGGGACTCCCTCCTCCCCTCCGAGAAGCATTTCATCAAGCACGTCCTCGCC 12413 Query 42429 TTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAG 42488 ||||||||||| || |||||||| ||| ||||| || ||| || | |||||||| ||| Sbjct 12412 TTCTTCGCCGCTTCCGACGGCATCGTCCTCGAGAATCTTGCCGCCCGCTTCATGAACGAG 12353 Query 42489 GTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCAC 42548 || ||| || ||||| ||| |||||||||||||||||| ||||| |||||| | ||| Sbjct 12352 GTCCAGGTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATTGCCATCGAGAACATCCAC 12293 Query 42549 TCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGG 42608 || ||| ||||| | || || | || || ||| |||| | | |||| | | Sbjct 12292 TCCGAGATGTACAGCCTTTTGATCGAGACCTATATCAAGGATTCTGCCGAGAAGGCCATG 12233 Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||| ||||| | || || |||||| || |||| ||||| | ||||| || | Sbjct 12232 CTCTTCCGCGCCATCCACACCATTCCCTGCGTCCAGAACAAGGCCAATTGGGCCCTGCGC 12173 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| || || |||| | | ||| |||| | ||| | ||||| || ||| ||| Sbjct 12172 TGGATTCAGGGTTCCGA---ATCCTTCACCGAGCGTCTGCTCGCCTTCGCCTGCGTGGAG 12116 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATG 42788 || || |||||||| || |||| | | || |||||||| ||| || | || |||| Sbjct 12115 GGGATATTCTTCTCCGGAAGCTTCTGCGCAATATTCTGGCTTAAGAAGCGCGGGTTGATG 12056 Query 42789 CCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTT 42848 ||||| | || ||||| |||||| | || |||| ||||| |||| | ||||| Sbjct 12055 CCCGGGTTGACGTTCTCCAACGAATTGATATCGCGGGATGAGGGTTTGCACTGCGACTTC 11996 Query 42849 GCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCC 42908 || ||||| |||| | |||| || | | | |||| ||||| | || || Sbjct 11995 GCGTGCCTGCTGTAC---AGCCTGCTGAAGAAGAAGCTGAGCGAGGAGAGAGTGAAGGGG 11939 Query 42909 ATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTG-TC 42967 || | |||| |||||||| || || | ||| ||| | || ||||| ||||| | Sbjct 11938 ATGGTGGCGGATGCCGTGGATATAGAAAGGGAATTCGTGTGCGAGGCGCTG-CCGTGCGC 11880 Query 42968 CCTGGTCGGCATGAAC 42983 |||| || |||||| Sbjct 11879 ATTGGTGGGGATGAAC 11864 >seq677466 Length=8805 Score = 174 bits (192), Expect = 3e-38 Identities = 375/560 (67%), Gaps = 3/560 (1%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || |||| |||||||||||||||| | || || Sbjct 8160 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTCGATTTG 8101 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 || |||| | | |||||| || || || |||| ||| |||| || Sbjct 8100 TCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCAC 8041 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || ||||||||||||||||| || ||||| || ||||| || ||| | | ||| Sbjct 8040 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCGGCCGTTTC 7981 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| ||| || |||||| ||| ||||||||||||||| || ||||| ||| Sbjct 7980 ATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 7921 Query 42540 AACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAG 42599 || | ||||| ||| ||||| || ||| | | |||||| |||| ||| || Sbjct 7920 AATATCCACTCCGAGATGTACAGTCTCCTCCTCGAATCCTACATCAAGGATTCCGAAGAA 7861 Query 42600 CGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGG 42659 | | || || || || || || | || ||| || | ||||| | ||| Sbjct 7860 AAGAGCTCCCTTTTTCGCGCAATTGATACTGTCCCTTGCGTCCAACGCAAGGCCAATTGG 7801 Query 42660 GCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACC 42719 || ||| |||||||| | | || | | || | ||| || | | |||||| | Sbjct 7800 GCCCTCCGTTGGATCGATGGCTCTGA---ATCCTTTGCTGAGCGGATAATCGCCTTTGCT 7744 Query 42720 GCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAG 42779 || ||||| || || ||||| || |||| | | || |||||||| ||| || Sbjct 7743 TGTGTGGAGGGGATTTTTTTCTCTGGAAGCTTCTGCGCGATTTTCTGGCTGAAGAAGCGT 7684 Query 42780 GTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCAT 42839 | | |||||| ||| | || || || |||||| | || |||||| ||||| || || Sbjct 7683 GGATTGATGCCTGGATTGACTTTTTCAAACGAATTGATTTCCAGGGATGAGGGCCTCCAC 7624 Query 42840 AGGGACTTTGCCTGCCTCCT 42859 | |||||||| ||||| || Sbjct 7623 TGTGACTTTGCGTGCCTGCT 7604 >seq611863 Length=950 Score = 138 bits (152), Expect = 2e-27 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || || || | |||||||||||||||| | || || Sbjct 646 ATCTGGGAGATGTACAAGAAAGCCGAGGCCTTCTTCTGGACCGCCGAGGAGGTCGATTTG 705 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAAC 42419 || |||| | | |||||| || || || |||| ||| |||| || Sbjct 706 TCCCAGGATATTCGCCACTGGGACTCCCTCACTCCCGACGAGCGCCACTTCATCAAGCAC 765 Query 42420 ATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTC 42479 | || ||||||||||||||||| || ||||| || ||||| || ||| | | ||| Sbjct 766 GTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTTCTCGAGAATCTCGCCTGCCGTTTC 825 Query 42480 ATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAG 42539 ||||| ||||| ||| || |||||| ||| ||||||||||||||| || ||||| ||| Sbjct 826 ATGAAGGAGGTCCAGGTCTCTGAGGCCCGCGCCTTCTACGGCTTCCAAATCGCCATCGAG 885 Query 42540 AACGTGCACTCTGAGGTGTAC 42560 || | ||||| ||| ||||| Sbjct 886 AATATCCACTCCGAGATGTAC 906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 934963233818880