Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq502676 96.9 3e-15 seq621678 93.3 3e-14 >seq502676 Length=6550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/237 (69%), Gaps = 18/237 (8%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||||| || || ||||| | || |||||| |||| |||||||||||| Sbjct 1304 ACCACCACGCAGCCTAAGGACAAGATGCAAAGTCGACTCCTTTTGAACGTTGTAATCTGC 1245 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || | | |||| |||||||| ||||| ||||||||||| | ||||||||| || Sbjct 1244 CAGAGTCCTCCCGTCTTCCAATTGTTTGCCTGCAAATATCAGCCTCTGCTGATCTGGTGG 1185 Query 34020 CACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCA 34079 | || ||||||| | | | |||| |||| |||| ||||| | | ||| | Sbjct 1184 AATGCCTTCTTTGT-CTTGAATTTTGGCTT--------TCACGTTATCAATTGTGTCGGA 1134 Query 34080 ---------TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | || |||||||| ||||| || ||||| ||||| || ||||| Sbjct 1133 GCTCTCAACTTCCAGAGTAATTGTTTTACCGGTCAGGGTTTTGACAAAAATCTGCAT 1077 >seq621678 Length=9740 Score = 93.3 bits (102), Expect = 3e-14 Identities = 157/227 (69%), Gaps = 18/227 (8%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || |||| ||| || ||| |||||| |||| ||||||||| || | ||| Sbjct 318 AGGCGAAGAACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGT 377 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 | || || | |||||||| ||||||||||| | ||| ||||| || | || |||| Sbjct 378 CCATCCTCGAGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCT 437 Query 34030 TTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC---GCATTCGACC 34086 |||||| | | | ||||||| | ||| ||||| ||| || || || ||| Sbjct 438 TTGTCC-TGAATCTTTGCTT--------TGACATTATCAATAGTGTCAGAGCTCTCCACC 488 Query 34087 ------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || || |||||||| || | |||||||||||| || ||||| Sbjct 489 TCCAGAGTAATGGTTTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 87.8 bits (96), Expect = 1e-12 Identities = 108/145 (74%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||||| || |||| ||| | ||| |||||| |||||||||||||| || Sbjct 536 ACCACCGCGCAGCCTTAGGACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGC 595 Query 33960 CAATTGTCGCT-CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 ||| ||| | | || |||||||| ||||| ||||| || || | |||||||||| | Sbjct 596 CAA-AGTCCTTCCATCTTCCAATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTG 654 Query 34019 GCACGCTCTCTTTGTCCATAATTTT 34043 | | | ||||||||| |||||| Sbjct 655 GAATTCCTTCTTTGTCCTGAATTTT 679 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 393218683098976