Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq677466 123 3e-23 seq445017 102 1e-16 seq615101 87.8 2e-12 >seq677466 Length=8805 Score = 123 bits (136), Expect = 3e-23 Identities = 308/456 (68%), Gaps = 14/456 (3%) Strand=Plus/Plus Query 125759 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 125818 || ||||| ||||| ||||| ||||| || |||||||| | || |||||| |||||| Sbjct 7325 TACTCCCCCACCCGTTTCTCAAAGAAATTCGTCTTCCCCTGCAGGCTGATCAACTCCATC 7384 Query 125819 AAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCA--CCCCAATCTGTTTGAGGAGAC 125876 ||||||||||||||| || | || || || |||||| | || || | | Sbjct 7385 CAATCAAATGGGTTCTGCACATTGTACATC-TTCCCATACCCCAA-CGCATTCAGCAATC 7442 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 |||||| || | |||||||||| |||| ||| ||||| || | | || Sbjct 7443 GATCCGCCACAAATTCAATGTACTGGCTCATCAATTCACCATTCATCCCCACCAACGCAC 7502 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | || ||||| || | | || || |||| || || || || ||| ||| ||| | | Sbjct 7503 ACGGCAGCGCATCGCACACAAATTCCCTCTCGATCTCAACAGCATCCGCCACTATGCCCT 7562 Query 125997 GAATGGTGTCCACCC-CAGGTCTAT--TGCGCAAAGTCT-TGAAG-AGTTCCACGGCAAA 126051 | | ||| | | ||| | || | ||| | || | ||| || |||| |||| Sbjct 7563 TCACTTTCTCCTCGCTCAGCTTCATCTTCAGCA--GGCTGTAAAGCAGG--CACG-CAAA 7617 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || |||||| ||||| || | ||| || | ||| || || || || ||| ||||| Sbjct 7618 GTCACAGTGGAGGCCCTCATCCCTGGAAATCAATTCGTTTGAAAAAGTCAATCCAGGCAT 7677 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || |||||||||| |||||||||||| || || || ||||| || || ||||| Sbjct 7678 CAATCCACGCTTCTTCAGCCAGAAAATCGCGCAGAAGCTTCCAGAGAAAAAAATCCCCTC 7737 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 |||||| || || || | | |||||||||||||| Sbjct 7738 CACACAAGCAAAGGCGATTATCCGCTCAGCAAAGGA 7773 >seq445017 Length=3110 Score = 102 bits (112), Expect = 1e-16 Identities = 235/346 (68%), Gaps = 10/346 (3%) Strand=Plus/Minus Query 10811 AGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCG 10870 ||||| ||| || ||||| ||||| || || || ||||||| || || || | Sbjct 2299 AGGGCAGAGTCGAGAATATCTGCACGGTTTGTGGCTGCAATGACAATAATACCAGTATTC 2240 Query 10871 TTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT- 10929 ||||| |||||||| || ||||| || || || | ||||| || | |||||||| Sbjct 2239 CCTTCAAAACCATCCATTTCTGTCAACAGCTGGTTTAAAGTTTGCTCTCTCTCATCATTT 2180 Query 10930 -CGCGGGC-ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987 | | | |||||| | | || || | || || || ||||||||||| | ||| Sbjct 2179 CCTCCACCGATACCAGTCCCTCTTTGTCGT---CCAACAGCATCAATTTCATCAACAAAA 2123 Query 10988 ACGATACACGGTTGATTTTCACGGGCAA-CTTCAAAGATATCTCGGACTCTCTTGGCACC 11046 || || || ||| |||||| ||| ||| ||| | ||| ||||| | | ||||| Sbjct 2122 ACAATGCATGGTGCATTTTCCTTGGCTTTCTTGAAA-AGATCACGGACCCGCGAAGCACC 2064 Query 11047 GACACCCACAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGG 11105 |||||| ||||||||||| ||||| | | | ||| |||| || || ||||| || Sbjct 2063 GACACCAACAAACATTTCAACAAACTCAGAACCTGAA-ATTGAGAAAAATGGGACCCCGG 2005 Query 11106 ATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 ||| || || || || ||| || | ||||| ||||| ||||| Sbjct 2004 CTTCCCCAGCTATAGCCTTGGCTAGCAATGTCTTTCCCGTACCAGG 1959 >seq615101 Length=1483 Score = 87.8 bits (96), Expect = 2e-12 Identities = 190/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Minus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC-GG 10934 ||| |||||||| ||||||||||| || || || ||||| || || ||||||||| | Sbjct 1057 AAAACCATCCATTTCAGTCAAGAGCTGGTTAATAGTTTGCTCTCGCTCATCATTCCCACC 998 Query 10935 GCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATAC 10994 || | | || || | | ||| | || || || ||||||||||| |||||||| || | Sbjct 997 GCCGAGC-CCTGCCCCTCTCTGCCTCCCCACAGCATCAATTTCATCAATGAAAACAATGC 939 Query 10995 ACGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCC 11053 | || | || || ||| ||||| | ||| | ||||| || || |||||| Sbjct 938 AAGG-CGCCTTCGACTTGGCTTTCTCAAACAAATCCCTCACTCTTGAAGCTCCAACACCC 880 Query 11054 ACAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | || || | ||| || ||| || ||| | ||||| Sbjct 879 ACAAACAGCTCTACAAACTCGGATGCTGCACACGAGAAGAACGGCACGCCTGCCTCACCG 820 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGT 11152 || | || | || | |||||||| || || || ||| Sbjct 819 GCCACCGCCCTTGCCAAAAGGGTCTTTCCGGTACCCGGT 781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591422715047040