Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ruellia_20speciosa_20[genbank_20GCA_5F001909325.1_202016-12-20] 794,288 sequences; 740,035,655 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq731700 107 2e-18 seq621678 104 3e-17 seq5020 104 3e-17 seq502676 100 3e-16 seq553100 98.7 1e-15 seq500796 95.1 1e-14 >seq731700 Length=3081 Score = 107 bits (118), Expect = 2e-18 Identities = 158/219 (72%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 41994 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 42053 |||| |||||||| | ||| |||||||||||| ||||||||||| || || || | Sbjct 1589 CGCAGAACCAAATGGAGGGTGGACTCCTTTTGAATGTTGTAATCAGCAAGGGTACGGCCA 1530 Query 42054 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTG 42113 || || ||||| || |||||||| || || | ||| ||||| | ||| | | ||||||| Sbjct 1529 TCCTCGAGCTGTTTCCCAGCGAAGATCAGCCTCTGTTGGTCCGGTGGGATTCCCTCCTTG 1470 Query 42114 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTG 42170 ||| || | || | || | ||| | || ||| || || |||||| || | || Sbjct 1469 TCC-TGGATCTTGGCTTTAACGTTGTCA-ATTGTATCT-GAGCTTTCCACCTCAAGGGTA 1413 Query 42171 ATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 ||||| || || || || || || |||||||| |||||| Sbjct 1412 ATGGTCTTCCCTGTGAGGGTTTTGACAAAGATCTGCATT 1374 Score = 96.9 bits (106), Expect = 4e-15 Identities = 142/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||||||||| || ||||||| | || ||||||||||| ||||| || Sbjct 2478 CTCCTTCTGGATATTGTAATCCGCAAGAGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAA 2419 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||| || | || | | |||||||| | ||| |||||| |||| Sbjct 2418 AATAAGCCTCTGCTGATCAGGAGGGATACCCTCCTTGT-CTTGAATTTTTGCCTTGACAT 2360 Query 42136 TCGCCACCGTGTCGCTCGA---TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| ||| ||||| || | ||||| || || || || || |||| Sbjct 2359 TGTCAATCGTGTC---CGAACTCTCCACCTCCAGAGTGATTGTCTTCCCTGTCAGGGTCT 2303 Query 42193 TTACAAAGATTTGCATT 42209 | ||||| || |||||| Sbjct 2302 TAACAAATATCTGCATT 2286 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| | | ||| | |||| ||| | ||| ||||| ||||| ||||||||||| Sbjct 1373 CCTCCACGGAGACGGAGGACCAGATGGAGAGTGGATTCCTTCTGAATGTTGTAATCAGCG 1314 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || ||||| || || ||||| ||||| | |||||||| | || Sbjct 1313 AGGGTGCGGCCATCCTCGAGCTGTTTGCCGGCGAAGATGAGCCTTTGCTGGTCTGGGGGA 1254 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTC---GCTCGATTC 42157 | | ||||||||| ||| | || | | | ||| | | | || || |||| || Sbjct 1253 ATCCCTTCCTTGTCC-TGAATCTTAGACTTAACGTTGTCGATTGTATCGGAGCTC---TC 1198 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| |||| |||||||| ||||| || || ||||| || ||||| ||||| Sbjct 1197 CACCTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 1147 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | | || |||||| |||| || |||||| |||||||| ||||| ||| Sbjct 2285 CCTCCCCTCAGCCTCAGCACCAAGTGCAGAGTCGACTCCTTCTGAATATTATAATCCGCC 2226 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | |||| | || ||||||||||| ||||| || || || | ||||||||| | ||| Sbjct 2225 AAGGTCCTGCCATCCTCTAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTCTGGTGGG 2166 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCG-TGTCG---CTCGATTC 42157 | | |||||||| ||| | || | | | | | | || | |||| ||| || Sbjct 2165 ATACCTTCCTTGTCT-TGAATCTTAGCCTTAACATTGTCAATGGTGTCCGAACTC---TC 2110 Query 42158 CACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || | || ||||| || || || || ||||| || ||||||||||| Sbjct 2109 CACTTCCAGGGTAATGGTCTTCCCTGTCAGGGTCTTGACGAAGATTTGCAT 2059 >seq621678 Length=9740 Score = 104 bits (114), Expect = 3e-17 Identities = 153/213 (72%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| ||| ||||||||||| ||||||||||| || || || | || || Sbjct 327 ACCAAATGCAGAGTGGACTCCTTTTGAACGTTGTAATCAGCAAGGGTTCGTCCATCCTCG 386 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| || || ||||| || | ||| || || | ||| | || ||| |||||| || Sbjct 387 AGCTGCTTGCCCGCAAATATCAGCCTCTGTTGATCTGGTGGGATGCCCTCTTTGTCC-TG 445 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | | |||| ||||| | | | ||||| |||| ||||| || | || ||||| Sbjct 446 AATCTTTGCTTTGACATTATCAATAGTGTCAGAGCTC---TCCACCTCCAGAGTAATGGT 502 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||| || || | || || ||||| || ||||| Sbjct 503 TTTTCCAGTCAATGTTTTCACAAATATCTGCAT 535 Score = 93.3 bits (102), Expect = 5e-14 Identities = 140/198 (71%), Gaps = 6/198 (3%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| ||||| || || || || |||| || |||||||| ||||| || Sbjct 1028 CTCCTTCTGGATATTATAATCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCAAA 1087 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 ||||| |||||||| |||| ||| | | |||||||| ||| || |||| | Sbjct 1088 GATGAGACGCTGCTGATCGGGTGGAATACCTTCCTTGTCTTGGATCTTGGCCTTGACGTT 1147 Query 42137 CGCCACCGTGTCG---CTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTT 42193 | | || ||| ||| || || |||| || ||||||||||| || || || || Sbjct 1148 ATCAATTGTATCGGAGCTC---TCGACTTCGAGAGTTATGGTTTTGCCGGTGAGGGTTTT 1204 Query 42194 TACAAAGATTTGCATTTT 42211 || ||||| ||||| || Sbjct 1205 CACGAAGATCTGCATCTT 1222 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 ||||||||||| ||| |||||||||||| |||||||| |||| ||||| | || || Sbjct 555 ACCAAATGCAAAGTGGACTCCTTTTGAATGTTGTAATCCGCCAAAGTCCTTCCATCTTCC 614 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 | || || || || || || || | |||||| || | ||| | | || |||||| || Sbjct 615 AATTGTTTGCCTGCAAAGATAAGCCTCTGCTGATCCGGTGGAATTCCTTCTTTGTCC-TG 673 Query 42120 ATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGT 42175 | |||| | ||| | | | | ||||| |||| || || || | ||| | || Sbjct 674 AATTTTGGCTTTTACGTTATCAATTGTGTCGGAGCTC---TCAACTTCCAGCGTAACTGT 730 Query 42176 TTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| ||||| || || || || || ||||| Sbjct 731 TTTGCCAGTTAGGGTTTTGACGAAAATCTGCAT 763 >seq5020 Length=1186 Score = 104 bits (114), Expect = 3e-17 Identities = 148/206 (72%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 42005 ATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTG 42064 ||||| ||| ||||| ||||| |||||||| || | ||||| |||| || ||||| Sbjct 1014 ATGCAGTGTTGATTCCTTCTGAATGTTGTAATCCGCTAAAGTCCTGCCGTCCTCCAGCTG 955 Query 42065 CTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTT 42124 ||| || || || ||||| |||||||| || | || | | ||||||||| ||| | | Sbjct 954 CTTCCCGGCAAAGATGAGGCGCTGCTGATCCGGAGGGATCCCTTCCTTGTCC-TGAATCT 896 Query 42125 TTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCG 42183 | | |||| | | | |||||| ||| || |||| |||||||||||||| | Sbjct 895 TGGCCTTGACATTGTCGATGGTGTCGGAGCTTTCGACTTCGAGAGTGATGGTTTTGCCGG 836 Query 42184 TTAGCGTCTTTACAAAGATTTGCATT 42209 |||| || || || ||||| |||||| Sbjct 835 TTAGGGTTTTGACGAAGATCTGCATT 810 >seq502676 Length=6550 Score = 100 bits (110), Expect = 3e-16 Identities = 150/212 (71%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||| ||||| || ||||||||| || || |||||||||||||| || | || || Sbjct 1513 ACCAGATGCAGAGTAGACTCCTTTTGGATGTTATAATCAGCCAGAGTACGGCCATCCTCA 1454 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||| ||||| ||||| || | ||| || |||| ||| | | || || ||| Sbjct 1453 AGCTGCTTGCCAGCAAATATAAGCCTCTGTTGATCGGGTGGGATACCTTCTTTATCCTGT 1394 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTT 42176 || ||| ||||| | | | ||||| ||| ||||| || | ||||||||| Sbjct 1393 ATCTTTGCTTTGACATTATCAATTGTGTCAGAACTC---TCCACTTCAAGAGTGATGGTT 1337 Query 42177 TTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || || ||||| ||||| || ||||| Sbjct 1336 TTTCCAGTCAGTGTCTTGACAAATATCTGCAT 1305 Score = 89.7 bits (98), Expect = 6e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || ||||| ||||| ||||| ||||| |||| ||||||||||| |||||||| Sbjct 812 CTCCTTCTGGATATTATAATCCGCCAGCGTCCGGCCGTCCTCTAGCTGCTTTCCAGCGAA 753 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTC 42115 ||||| ||||| || || | || | | ||||||||| Sbjct 752 GATGAGACGCTGTTGATCCGGCGGAATCCCCTCCTTGTC 714 >seq553100 Length=2664 Score = 98.7 bits (108), Expect = 1e-15 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || ||||| || | ||| |||||||| | ||| || || |||| ||||||||| ||| Sbjct 881 CCGCCTCTCAACCTCAAAACCAAATGTAGAGTGGAATCTTTCTGAACATTGTAATCTGCC 822 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 ||||||| | | | || ||||||||||| || ||||| || |||||||| | | || Sbjct 821 AGAGTCCTCCCATTTTCGAGCTGCTTACCGGCAAATATCAGGCGCTGCTGTTTGTTAGGA 762 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | || ||||||||| ||| | || | |||| ||| | | || | ||| |||| Sbjct 761 ATGCCTTCCTTGTCC-TGAATCTTGGCCTTGA-CGTTGTCGACTGCGTCTGAACTGTCCA 704 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || | || |||||||| || || | || || || ||||| |||||| Sbjct 703 CCTCTAGGGTAATGGTTTTTCCAGTCAAGGTTTTGACGAAGATCTGCATT 654 >seq500796 Length=7474 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| |||||||||||||| || || || | || || || ||||| ||||| || Sbjct 2300 TCCTTTTGGATATTGTAATCAGCAAGGGTACGGCCATCTTCAAGTTGCTTCCCAGCAAAG 2241 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || |||| ||||||||| | || | | ||||| ||| ||| ||| ||||| | Sbjct 2240 ATCAGTCTCTGCTGGTCAGGAGGAATACCTTCCTTATCCTGGATCTTTGCTTTGACATTG 2181 Query 42138 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194 | | || || |||| || || |||| || || ||||| || || || ||||| Sbjct 2180 TCAATGGTATCTGAGCTC---TCAACCTCGAGAGTAATTGTTTTTCCAGTAAGAGTCTTC 2124 Query 42195 ACAAAGATTTGCAT 42208 ||||| |||||||| Sbjct 2123 ACAAAAATTTGCAT 2110 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 ||| || || ||||||||||| || |||||||| | || || || ||||| ||||| || Sbjct 2073 CTCTTTCTGGATATTGTAATCTGCAAGAGTCCGGCCATCTTCAAGTTGCTTTCCAGCAAA 2014 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | |||||| || | || | | ||||| | | ||| | |||| ||||| Sbjct 2013 GATTAGCCTCTGCTGATCTGGAGGAATTCCTTCCTTAT-CTTGAATCTTTGCCTTGAGAT 1955 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 | | | || || | ||| || |||| ||| |||||||| || || || ||||| | Sbjct 1954 TATCGATGGTATCAGAGGTTTCAACCTCGAGCGTTATGGTTTTACCAGTAAGAGTCTTCA 1895 Query 42196 CAAAGATTTGCAT 42208 ||||||||||||| Sbjct 1894 CAAAGATTTGCAT 1882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537819457393920